Wall clock time and date at job start Mon Mar 30 2020 20:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 13 13 H 1.09002 * 109.47075 * 299.99262 * 12 2 1 14 14 C 1.52997 * 109.47415 * 59.99873 * 12 2 1 15 15 C 1.52999 * 109.47269 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47317 * 300.00344 * 15 14 12 17 17 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.46947 * 299.99853 * 16 15 14 19 19 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 20 20 H 1.09004 * 109.46724 * 180.02562 * 19 16 15 21 21 O 1.42895 * 109.47621 * 59.99980 * 19 16 15 22 22 C 1.53002 * 109.47233 * 299.99657 * 19 16 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47140 * 300.00024 * 14 12 2 28 28 H 1.09002 * 109.47045 * 59.99931 * 14 12 2 29 29 H 1.09002 * 109.46716 * 60.00253 * 15 14 12 30 30 H 1.08996 * 109.46929 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47372 * 60.00310 * 18 16 15 32 32 H 1.09000 * 109.46870 * 180.02562 * 18 16 15 33 33 H 1.09004 * 109.47108 * 300.00054 * 18 16 15 34 34 H 0.96698 * 114.00503 * 180.02562 * 21 19 16 35 35 H 1.09002 * 109.47075 * 300.00932 * 22 19 16 36 36 H 1.08996 * 109.47407 * 179.97438 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 6 2.0399 -0.7212 -1.2493 13 1 1.6766 -1.7489 -1.2493 14 6 1.5299 0.0000 -2.4985 15 6 2.0404 -0.7209 -3.7478 16 6 3.5703 -0.7204 -3.7475 17 1 3.9339 -1.2344 -4.6373 18 6 4.0798 0.7222 -3.7472 19 6 4.0803 -1.4417 -2.4983 20 1 5.1703 -1.4410 -2.4980 21 8 3.6044 -2.7891 -2.4985 22 6 3.5700 -0.7208 -1.2490 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 0.7095 1.1617 3.4844 27 1 0.4399 0.0000 -2.4985 28 1 1.8932 1.0277 -2.4985 29 1 1.6773 -1.7486 -3.7480 30 1 1.6766 -0.2073 -4.6377 31 1 3.7163 1.2358 -2.8572 32 1 5.1699 0.7225 -3.7475 33 1 3.7165 1.2361 -4.6372 34 1 3.8894 -3.3071 -1.7333 35 1 3.9329 0.3070 -1.2489 36 1 3.9329 -1.2349 -0.3591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307538071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:33:46 Heat of formation + Delta-G solvation = -85.621024 kcal Electronic energy + Delta-G solvation = -15250.455107 eV Core-core repulsion = 12926.136624 eV Total energy + Delta-G solvation = -2324.318483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25631 -35.37567 -34.17896 -31.75146 -29.55037 -28.69698 -25.63293 -25.11753 -22.12153 -21.80983 -19.19716 -18.14598 -16.46050 -16.12039 -15.47276 -14.54645 -14.47255 -13.69668 -13.15448 -12.84494 -12.37006 -12.19682 -11.97391 -11.70777 -11.56941 -11.21832 -11.04130 -10.90883 -10.58852 -10.49662 -10.20572 -10.02764 -9.93971 -9.73919 -9.60972 -9.17069 -8.65836 -8.52950 -8.25215 -5.92047 -3.97436 3.30934 3.39308 3.41937 4.47320 4.58494 5.13848 5.20820 5.37308 5.43523 5.70565 5.73370 5.81463 5.90949 6.00415 6.07924 6.19073 6.26870 6.34348 6.41852 6.52829 6.71478 6.78284 6.83648 6.98557 7.03104 7.14786 7.27122 7.38314 7.51930 7.80717 8.07369 8.10657 8.25105 8.55235 9.06471 9.66571 11.13739 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039018 B = 0.009411 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.441222 B = 2974.549560 C = 3289.292111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 H 0.021 0.979 4 C -0.504 4.504 5 H 0.054 0.946 6 C 0.058 3.942 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.067 4.067 13 H 0.059 0.941 14 C -0.117 4.117 15 C -0.108 4.108 16 C -0.080 4.080 17 H 0.062 0.938 18 C -0.150 4.150 19 C 0.107 3.893 20 H 0.040 0.960 21 O -0.567 6.567 22 C -0.137 4.137 23 H 0.022 0.978 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.257 0.743 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.374 0.626 35 H 0.064 0.936 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -2.036 -9.709 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.072 0.928 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.714 3.286 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.086 4.086 13 H 0.078 0.922 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.099 4.099 17 H 0.081 0.919 18 C -0.207 4.207 19 C 0.048 3.952 20 H 0.058 0.942 21 O -0.373 6.373 22 C -0.174 4.174 23 H 0.041 0.959 24 H 0.097 0.903 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.082 0.918 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.415 -1.720 -10.134 11.187 hybrid contribution 0.587 -0.588 1.514 1.727 sum 5.002 -2.308 -8.620 10.230 Atomic orbital electron populations 1.21832 0.99125 0.98697 0.99830 1.18697 0.92263 0.95417 0.90783 0.96067 1.21257 1.30385 1.11909 0.90637 0.92754 1.24978 0.95322 0.95067 0.98874 1.69910 1.37180 1.23120 1.22892 0.86639 0.78605 0.79703 0.83625 1.19922 1.21230 1.21192 1.21058 0.93127 0.99535 0.94834 0.92244 1.21718 1.00181 0.98992 0.94581 1.21488 0.94184 1.01067 0.97850 1.20994 0.96837 0.95334 0.96706 0.91914 1.21920 1.00283 0.95938 1.02560 1.21871 0.95274 0.82097 0.95956 0.94159 1.86417 1.78185 1.23615 1.49063 1.22229 0.98177 1.00658 0.96379 0.95891 0.90342 0.97223 0.93297 0.92315 0.92690 0.91696 0.93336 0.91123 0.93203 0.92739 0.77915 0.91788 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.62 37.16 0.32 -3.05 16 2 C 0.05 1.16 1.89 -91.77 -0.17 0.98 16 3 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.50 -13.58 7.83 -34.44 -0.27 -13.85 16 5 H 0.05 1.44 6.71 -52.49 -0.35 1.09 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C -0.07 -1.37 1.59 -90.62 -0.14 -1.52 16 13 H 0.06 1.30 7.68 -51.93 -0.40 0.90 16 14 C -0.12 -2.11 4.58 -26.73 -0.12 -2.24 16 15 C -0.11 -1.71 5.30 -26.73 -0.14 -1.85 16 16 C -0.08 -1.18 2.94 -90.62 -0.27 -1.45 16 17 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.15 -1.98 8.50 37.16 0.32 -1.67 16 19 C 0.11 1.67 3.30 -26.73 -0.09 1.59 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 O -0.57 -9.09 11.97 -35.23 -0.42 -9.51 16 22 C -0.14 -2.52 4.39 -26.73 -0.12 -2.64 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 25 H 0.01 0.20 6.43 -51.93 -0.33 -0.14 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 28 H 0.05 0.98 6.43 -51.93 -0.33 0.64 16 29 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.03 4.81 -51.93 -0.25 0.78 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.37 4.88 9.08 45.56 0.41 5.29 16 35 H 0.06 1.18 6.43 -51.93 -0.33 0.85 16 36 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -28.84 268.06 -6.63 -35.47 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.07 Total: 2.98 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -0.78 Total: -24.18 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.63 Total: -25.10 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.42 Total: -9.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.84 -6.63 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307538071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.154 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds