Wall clock time and date at job start Mon Mar 30 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47385 * 54.99993 * 4 3 2 6 6 C 1.53004 * 109.47185 * 294.99592 * 4 3 2 7 7 C 1.53005 * 109.47123 * 174.99805 * 4 3 2 8 8 H 1.09002 * 110.32694 * 57.74939 * 7 4 3 9 9 C 1.54475 * 110.37322 * 180.02562 * 7 4 3 10 10 C 1.54509 * 104.06475 * 142.81132 * 9 7 4 11 11 C 1.54479 * 104.05891 * 359.97438 * 10 9 7 12 12 H 1.08994 * 110.37279 * 94.96455 * 11 10 9 13 13 C 1.50702 * 110.36956 * 217.18909 * 11 10 9 14 14 H 1.08002 * 120.00299 * 358.45638 * 13 11 10 15 15 C 1.37884 * 119.99942 * 178.17197 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 O 1.44425 * 104.90221 * 336.07569 * 11 10 9 22 22 H 1.09003 * 109.47340 * 299.99524 * 1 2 3 23 23 H 1.08999 * 109.47126 * 60.00367 * 1 2 3 24 24 H 1.09001 * 109.46748 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47417 * 239.99697 * 2 1 3 26 26 H 1.09009 * 109.47187 * 119.99557 * 2 1 3 27 27 H 1.08999 * 109.46751 * 59.99531 * 3 2 1 28 28 H 1.08999 * 109.46785 * 299.99842 * 3 2 1 29 29 H 1.09000 * 109.47071 * 180.02562 * 6 4 3 30 30 H 1.08995 * 109.47286 * 300.00461 * 6 4 3 31 31 H 1.09001 * 109.46942 * 60.00021 * 6 4 3 32 32 H 1.08999 * 110.51258 * 24.16319 * 9 7 4 33 33 H 1.09001 * 110.62387 * 261.51450 * 9 7 4 34 34 H 1.08997 * 110.50984 * 241.35796 * 10 9 7 35 35 H 1.08999 * 110.62868 * 118.69659 * 10 9 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 1 3.6922 3.4916 0.6880 9 6 5.6245 2.9037 -0.1298 10 6 5.9803 4.0202 -1.1369 11 6 4.6086 4.5381 -1.6232 12 1 4.3028 5.4071 -1.0408 13 6 4.6682 4.8845 -3.0887 14 1 5.5957 4.7777 -3.6316 15 6 3.5371 5.3323 -3.7378 16 7 2.4077 5.4623 -3.0767 17 14 3.6092 5.7543 -5.5560 18 1 4.9854 5.5233 -6.0637 19 1 2.6559 4.8941 -6.3020 20 1 3.2433 7.1807 -5.7480 21 8 3.6975 3.4393 -1.4030 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 5.1705 0.8332 1.3062 30 1 3.7175 1.4220 2.1485 31 1 3.7172 -0.1910 1.3961 32 1 6.0207 1.9456 -0.4661 33 1 6.0069 3.1474 0.8614 34 1 6.5524 3.6140 -1.9710 35 1 6.5375 4.8176 -0.6451 36 1 1.6120 5.7777 -3.5333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308176732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:02 Heat of formation + Delta-G solvation = -98.907123 kcal Electronic energy + Delta-G solvation = -14767.356077 eV Core-core repulsion = 12442.461466 eV Total energy + Delta-G solvation = -2324.894611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18887 -37.22508 -34.71578 -33.28121 -32.41395 -29.57838 -27.42469 -26.41098 -23.87236 -22.32746 -21.43272 -20.74959 -18.71803 -17.01032 -16.57352 -16.33355 -15.95539 -15.56871 -14.90105 -14.34330 -14.21292 -13.95114 -13.60555 -13.25495 -12.98790 -12.87001 -12.80129 -12.37142 -12.33024 -12.23197 -11.98353 -11.84494 -11.62634 -11.33739 -11.23055 -11.04914 -10.87752 -10.71725 -9.99900 -8.17508 -6.37822 1.38001 1.39447 1.52198 2.38937 3.04602 3.62725 3.74513 3.99574 4.14101 4.24116 4.25616 4.33896 4.44352 4.54417 4.66053 4.70342 4.78398 4.88548 4.93974 5.01514 5.03775 5.09534 5.12692 5.14916 5.26446 5.30054 5.35576 5.44037 5.50046 5.58439 5.65442 5.72517 6.15733 6.56083 6.94376 7.37367 8.91331 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028615 B = 0.009140 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.276234 B = 3062.588500 C = 3822.426896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.077 4.077 5 H 0.060 0.940 6 C -0.136 4.136 7 C 0.058 3.942 8 H 0.038 0.962 9 C -0.134 4.134 10 C -0.142 4.142 11 C 0.195 3.805 12 H -0.013 1.013 13 C -0.552 4.552 14 H 0.065 0.935 15 C 0.019 3.981 16 N -0.903 5.903 17 Si 0.964 3.036 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.274 1.274 21 O -0.383 6.383 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -9.755 7.906 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.146 4.146 4 C -0.096 4.096 5 H 0.078 0.922 6 C -0.193 4.193 7 C -0.001 4.001 8 H 0.056 0.944 9 C -0.172 4.172 10 C -0.180 4.180 11 C 0.139 3.861 12 H 0.004 0.996 13 C -0.589 4.589 14 H 0.083 0.917 15 C -0.183 4.183 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.199 1.199 21 O -0.303 6.303 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.347 -9.774 7.763 12.554 hybrid contribution -0.185 0.822 -0.940 1.263 sum 1.162 -8.952 6.823 11.315 Atomic orbital electron populations 1.21772 0.95666 1.02081 1.01344 1.21545 0.96096 0.95445 1.02368 1.21516 0.95035 0.97555 1.00526 1.21121 0.95551 0.93426 0.99468 0.92183 1.21802 1.01457 1.01121 0.94934 1.23118 0.94134 0.94891 0.87924 0.94431 1.22897 0.95575 0.99064 0.99646 1.22932 0.98239 0.98293 0.98537 1.20398 0.85283 0.85425 0.94994 0.99583 1.21521 0.96602 1.45139 0.95681 0.91691 1.26017 0.94948 0.94100 1.03205 1.70197 1.00866 1.45107 1.37926 0.85434 0.78615 0.77919 0.79207 1.18462 1.20653 1.19905 1.89421 1.57592 1.47987 1.35297 0.92465 0.94378 0.91148 0.92706 0.89899 0.92499 0.95246 0.91669 0.92357 0.90544 0.90371 0.89410 0.92194 0.91254 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.06 5.69 30.59 0.17 -2.88 16 3 C -0.11 -3.69 4.64 30.59 0.14 -3.54 16 4 C -0.08 -2.57 2.07 -10.79 -0.02 -2.59 16 5 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.14 -3.24 8.72 71.98 0.63 -2.61 16 7 C 0.06 2.37 2.81 31.10 0.09 2.46 16 8 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.13 -4.75 5.54 31.61 0.18 -4.57 16 10 C -0.14 -6.09 6.62 31.61 0.21 -5.88 16 11 C 0.19 10.74 3.08 30.35 0.09 10.83 16 12 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 13 C -0.55 -32.63 8.78 25.60 0.22 -32.40 16 14 H 0.06 3.69 7.58 -2.91 -0.02 3.67 16 15 C 0.02 1.12 5.42 84.66 0.46 1.58 16 16 N -0.90 -56.60 12.99 21.45 0.28 -56.32 16 17 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 O -0.38 -21.06 10.14 -148.98 -1.51 -22.57 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.76 6.57 -2.38 -0.02 1.74 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.25 7.72 -2.39 -0.02 1.24 16 29 H 0.06 1.41 7.11 -2.39 -0.02 1.40 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.50 6.57 -2.39 -0.02 1.49 16 32 H 0.08 2.50 7.65 -2.39 -0.02 2.49 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.06 2.56 7.71 -2.39 -0.02 2.54 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -68.28 286.04 4.69 -63.59 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.01 Total: 10.40 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 2.88 Total: -42.54 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.32 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.51 Total: -22.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.28 4.69 -63.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308176732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.317 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds