Wall clock time and date at job start Mon Mar 30 2020 20:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47524 * 2 1 4 4 C 1.52998 * 109.46961 * 119.99629 * 2 1 3 5 5 N 1.46900 * 109.47152 * 53.13035 * 4 2 1 6 6 C 1.48532 * 111.00294 * 60.14250 * 5 4 2 7 7 C 1.54930 * 103.23035 * 159.72195 * 6 5 4 8 8 C 1.54596 * 102.92151 * 322.58339 * 7 6 5 9 9 C 1.47910 * 111.00156 * 177.53785 * 5 4 2 10 10 N 1.46502 * 109.47068 * 239.99606 * 2 1 3 11 11 C 1.36929 * 119.99948 * 54.04250 * 10 2 1 12 12 H 1.07997 * 120.00177 * 0.02562 * 11 10 2 13 13 C 1.38816 * 119.99670 * 180.02562 * 11 10 2 14 14 N 1.31612 * 120.00077 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99604 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47320 * 60.00390 * 15 13 11 17 17 H 1.48506 * 109.47011 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47684 * 299.99910 * 15 13 11 19 19 H 1.08998 * 109.46757 * 300.00614 * 1 2 3 20 20 H 1.09001 * 109.46824 * 60.00141 * 1 2 3 21 21 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47469 * 185.30473 * 3 2 1 23 23 H 1.09008 * 109.46606 * 305.30050 * 3 2 1 24 24 H 1.09000 * 109.47656 * 65.29793 * 3 2 1 25 25 H 1.09003 * 109.47408 * 173.12732 * 4 2 1 26 26 H 1.08995 * 109.47345 * 293.12748 * 4 2 1 27 27 H 1.09003 * 110.66161 * 278.15564 * 6 5 4 28 28 H 1.09000 * 110.66891 * 41.28145 * 6 5 4 29 29 H 1.09004 * 110.72612 * 204.22417 * 7 6 5 30 30 H 1.09004 * 110.72559 * 80.94114 * 7 6 5 31 31 H 1.08998 * 110.30961 * 263.04158 * 8 7 6 32 32 H 1.09000 * 110.39256 * 140.91618 * 8 7 6 33 33 H 1.08998 * 109.91469 * 333.50768 * 9 5 4 34 34 H 1.08997 * 109.91634 * 94.60469 * 9 5 4 35 35 H 0.97007 * 119.99390 * 234.04037 * 10 2 1 36 36 H 0.97003 * 120.00207 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4197 -2.0500 1.3351 6 6 1.7549 -2.8719 0.1441 7 6 1.4967 -4.3205 0.6289 8 6 1.9827 -4.2859 2.0960 9 6 1.9343 -2.8010 2.5008 10 7 2.0183 -0.6907 -1.1961 11 6 1.5900 -0.2983 -2.4361 12 1 0.8926 0.5206 -2.5324 13 6 2.0524 -0.9531 -3.5694 14 7 2.9019 -1.9515 -3.4521 15 14 1.4675 -0.4183 -5.2610 16 1 1.8422 1.0005 -5.4886 17 1 2.1045 -1.2702 -6.2972 18 1 -0.0085 -0.5596 -5.3421 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1259 1.4439 -0.0950 23 1 1.6013 1.9829 -0.8388 24 1 1.7564 1.9282 0.9336 25 1 3.1230 -0.8289 1.1900 26 1 1.7805 -0.1413 2.1349 27 1 1.1003 -2.6233 -0.6913 28 1 2.8008 -2.7394 -0.1328 29 1 2.0809 -5.0324 0.0456 30 1 0.4344 -4.5601 0.5800 31 1 3.0027 -4.6640 2.1657 32 1 1.3183 -4.8728 2.7302 33 1 2.9354 -2.4524 2.7545 34 1 1.2676 -2.6668 3.3526 35 1 2.6451 -1.4260 -1.1096 36 1 3.2253 -2.4088 -4.2440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308633040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:05 Heat of formation + Delta-G solvation = 4.530139 kcal Electronic energy + Delta-G solvation = -15300.147493 eV Core-core repulsion = 13012.031009 eV Total energy + Delta-G solvation = -2288.116484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36411 -37.59899 -34.50627 -32.20282 -30.72341 -29.57114 -27.86363 -26.48827 -25.52466 -22.03395 -21.55140 -20.18293 -18.86611 -17.14812 -16.78946 -16.34319 -15.71814 -15.33054 -14.92823 -14.45531 -14.03461 -13.87267 -13.31367 -13.19790 -13.04089 -12.75468 -12.66457 -12.49039 -12.32002 -12.28105 -12.08701 -11.93222 -11.80497 -11.49683 -11.31146 -11.05778 -10.80089 -9.24724 -8.85324 -7.85545 -5.09846 1.47630 1.49210 1.54771 2.60896 3.18456 3.48959 3.78251 3.86500 3.96944 4.14316 4.24771 4.44696 4.48099 4.58047 4.72320 4.74223 4.82839 4.89587 4.97413 5.00969 5.04481 5.17619 5.20312 5.27495 5.27886 5.36068 5.45394 5.51294 5.65456 5.77870 6.09410 6.27103 6.37710 7.44051 8.21596 8.45213 9.37991 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031971 B = 0.010740 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.591650 B = 2606.513611 C = 3183.883155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.181 3.819 3 C -0.145 4.145 4 C 0.057 3.943 5 N -0.514 5.514 6 C 0.052 3.948 7 C -0.126 4.126 8 C -0.121 4.121 9 C 0.031 3.969 10 N -0.732 5.732 11 C -0.216 4.216 12 H 0.070 0.930 13 C -0.077 4.077 14 N -0.969 5.969 15 Si 0.960 3.040 16 H -0.283 1.283 17 H -0.299 1.299 18 H -0.282 1.282 19 H 0.062 0.938 20 H 0.029 0.971 21 H 0.046 0.954 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.377 0.623 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -0.785 12.419 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 C -0.205 4.205 4 C -0.072 4.072 5 N -0.238 5.238 6 C -0.076 4.076 7 C -0.164 4.164 8 C -0.159 4.159 9 C -0.097 4.097 10 N -0.377 5.377 11 C -0.349 4.349 12 H 0.088 0.912 13 C -0.269 4.269 14 N -0.621 5.621 15 Si 0.791 3.209 16 H -0.210 1.210 17 H -0.226 1.226 18 H -0.209 1.209 19 H 0.081 0.919 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.037 0.963 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.214 0.786 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.203 -0.598 12.351 12.774 hybrid contribution 1.107 -0.061 -1.547 1.904 sum -2.097 -0.659 10.804 11.025 Atomic orbital electron populations 1.21891 0.95936 1.01009 0.99598 1.19965 0.93674 0.91319 0.85902 1.22169 0.99958 0.97317 1.01021 1.22425 0.95258 0.91072 0.98416 1.64791 1.54499 1.02018 1.02526 1.23212 0.97773 0.92755 0.93884 1.22523 1.01548 0.95729 0.96605 1.22365 1.01897 0.95943 0.95711 1.22981 0.98782 0.93533 0.94409 1.43231 1.53537 1.39784 1.01111 1.19419 1.19115 1.11365 0.84962 0.91182 1.25347 1.01301 0.99558 1.00672 1.69788 1.37713 1.26242 1.28380 0.85393 0.77588 0.77055 0.80851 1.21009 1.22574 1.20895 0.91903 0.95208 0.93461 0.94515 0.94201 0.90876 0.96254 0.88303 0.91174 0.96377 0.91602 0.91068 0.91184 0.89283 0.94048 0.88985 0.78586 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.10 71.98 0.58 -4.16 16 2 C 0.18 7.14 0.77 3.60 0.00 7.14 16 3 C -0.14 -5.24 8.46 71.98 0.61 -4.63 16 4 C 0.06 1.93 4.05 86.30 0.35 2.28 16 5 N -0.51 -17.21 4.33 -883.03 -3.82 -21.03 16 6 C 0.05 2.04 4.37 86.65 0.38 2.42 16 7 C -0.13 -3.92 7.06 31.80 0.22 -3.70 16 8 C -0.12 -2.97 6.93 31.47 0.22 -2.75 16 9 C 0.03 0.80 6.70 86.44 0.58 1.38 16 10 N -0.73 -36.37 3.35 -303.36 -1.01 -37.39 16 11 C -0.22 -11.90 8.78 84.04 0.74 -11.16 16 12 H 0.07 3.77 6.74 -2.91 -0.02 3.75 16 13 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 14 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 15 Si 0.96 47.01 29.55 68.60 2.03 49.04 16 16 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 18 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 20 H 0.03 1.19 6.97 -2.39 -0.02 1.18 16 21 H 0.05 1.91 6.85 -2.39 -0.02 1.90 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.53 7.81 -2.38 -0.02 1.51 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.02 0.70 7.99 -2.39 -0.02 0.68 16 26 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.07 3.36 6.45 -2.39 -0.02 3.34 16 28 H 0.02 0.81 6.48 -2.39 -0.02 0.79 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.06 7.70 -2.39 -0.02 1.04 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.38 20.08 4.54 -92.70 -0.42 19.65 16 36 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -61.78 275.44 2.24 -59.54 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.61 Total: 25.85 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.15 Total: -17.15 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -4.56 Total: -117.28 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -61.78 2.24 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308633040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.074 kcal (2) G-P(sol) polarization free energy of solvation -61.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds