Wall clock time and date at job start Mon Mar 30 2020 20:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99799 * 2 1 4 4 H 1.48501 * 109.47281 * 90.00115 * 3 2 1 5 5 H 1.48501 * 109.47163 * 329.99942 * 3 2 1 6 6 H 1.48507 * 109.47412 * 210.00526 * 3 2 1 7 7 C 1.37878 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99612 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00362 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47460 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47174 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46820 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46860 * 174.85712 * 12 11 10 14 14 C 1.47906 * 110.99767 * 175.70985 * 13 12 11 15 15 C 1.53988 * 107.05609 * 214.15411 * 14 13 12 16 16 C 1.54591 * 105.14191 * 1.22759 * 15 14 13 17 17 H 1.09003 * 110.72282 * 263.59877 * 16 15 14 18 18 N 1.46906 * 110.72612 * 140.31438 * 16 15 14 19 19 C 1.48528 * 111.00101 * 58.31338 * 13 12 11 20 20 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47329 * 299.99682 * 9 7 2 22 22 H 1.09000 * 109.47452 * 59.99595 * 9 7 2 23 23 H 1.09002 * 109.46602 * 300.00142 * 10 9 7 24 24 H 1.09000 * 109.47107 * 59.99398 * 10 9 7 25 25 H 1.09002 * 109.47374 * 299.99549 * 11 10 9 26 26 H 1.08998 * 109.47277 * 59.99942 * 11 10 9 27 27 H 1.08995 * 109.47285 * 294.85517 * 12 11 10 28 28 H 1.08997 * 109.46948 * 54.85998 * 12 11 10 29 29 H 1.08997 * 109.91627 * 333.51055 * 14 13 12 30 30 H 1.09005 * 109.91544 * 94.80390 * 14 13 12 31 31 H 1.09008 * 110.30831 * 120.14401 * 15 14 13 32 32 H 1.09000 * 110.31290 * 242.30848 * 15 14 13 33 33 H 1.00901 * 110.99697 * 61.45572 * 18 16 15 34 34 H 1.00902 * 110.99965 * 185.40481 * 18 16 15 35 35 H 1.08996 * 110.66955 * 278.15307 * 19 13 12 36 36 H 1.09001 * 110.66960 * 41.28785 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4464 2.6527 -0.7001 6 1 3.5466 1.4403 -0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6363 -0.0009 12 6 6.0617 -4.0789 -0.0002 13 7 7.5255 -4.0807 -0.1243 14 6 8.0641 -5.4545 -0.0243 15 6 9.4281 -5.3545 0.6833 16 6 9.6084 -3.8526 1.0021 17 1 10.2087 -3.3647 0.2341 18 7 10.2123 -3.6716 2.3290 19 6 8.1546 -3.3174 0.9838 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6799 -0.8912 22 1 3.8752 -0.6802 0.8888 23 1 3.6587 -3.1500 0.8893 24 1 3.6580 -3.1505 -0.8907 25 1 5.9150 -2.1226 -0.8910 26 1 5.9149 -2.1224 0.8890 27 1 5.7756 -4.5649 0.9325 28 1 5.6252 -4.6190 -0.8403 29 1 7.3871 -6.0772 0.5605 30 1 8.1930 -5.8763 -1.0212 31 1 9.4205 -5.9383 1.6038 32 1 10.2234 -5.6991 0.0225 33 1 11.1288 -4.0918 2.3695 34 1 10.2512 -2.6946 2.5784 35 1 8.1407 -2.2485 0.7711 36 1 7.6548 -3.5292 1.9291 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385320478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:07 Heat of formation + Delta-G solvation = -15.967840 kcal Electronic energy + Delta-G solvation = -13983.617004 eV Core-core repulsion = 11694.611660 eV Total energy + Delta-G solvation = -2289.005343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21592 -35.45700 -33.79964 -32.25654 -30.48350 -28.31421 -27.46193 -24.41219 -21.93501 -20.76729 -20.40701 -19.80732 -16.66503 -16.38416 -15.79038 -15.59081 -15.01857 -14.22689 -14.13259 -13.58249 -13.25710 -12.88332 -12.60642 -12.02917 -11.75606 -11.64123 -11.47756 -11.19089 -11.03106 -10.96438 -10.65304 -10.48373 -9.83645 -9.63848 -9.44485 -9.11261 -9.01625 -8.49346 -8.40884 -5.99965 -3.97362 3.33972 3.41008 3.45891 3.84687 4.39944 4.48166 4.49563 4.58625 4.91890 5.16855 5.32156 5.35122 5.42518 5.48254 5.59769 5.67952 5.81107 5.85290 5.85779 5.93102 6.04835 6.19326 6.39254 6.68389 6.77882 6.80017 6.94259 6.97390 7.08239 7.18584 7.38230 7.51503 7.85409 8.59605 9.05462 9.63156 11.13732 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052830 B = 0.005165 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.878377 B = 5419.888823 C = 5789.972822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.048 3.952 13 N -0.519 5.519 14 C 0.036 3.964 15 C -0.125 4.125 16 C 0.081 3.919 17 H 0.050 0.950 18 N -0.844 5.844 19 C 0.042 3.958 20 H 0.262 0.738 21 H 0.015 0.985 22 H 0.009 0.991 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.341 0.659 34 H 0.344 0.656 35 H 0.080 0.920 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.440 -8.345 1.768 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.080 4.080 13 N -0.243 5.243 14 C -0.092 4.092 15 C -0.164 4.164 16 C -0.031 4.031 17 H 0.068 0.932 18 N -0.374 5.374 19 C -0.087 4.087 20 H 0.072 0.928 21 H 0.033 0.967 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.770 -8.434 1.512 21.547 hybrid contribution 0.801 1.081 0.296 1.378 sum 20.572 -7.353 1.808 21.921 Atomic orbital electron populations 1.69919 1.06315 1.26808 1.51495 1.25044 0.94726 0.99193 0.94645 0.86764 0.80395 0.83599 0.78452 1.20357 1.21433 1.18988 1.21196 0.89705 0.94406 1.50426 0.91122 1.19568 0.96944 0.92500 0.96107 1.21424 0.91781 0.99788 1.00958 1.21714 0.97580 0.94440 1.01846 1.22405 0.86273 0.98885 1.00397 1.64795 1.06631 1.10115 1.42747 1.22824 0.94967 0.91037 1.00376 1.22455 0.97296 0.96058 1.00579 1.22267 0.95434 0.95945 0.89434 0.93241 1.58720 1.28527 1.21521 1.28678 1.23204 0.92838 0.98981 0.93646 0.92814 0.96660 0.97251 0.93061 0.92760 0.91655 0.92713 0.94781 0.90605 0.93600 0.90463 0.90537 0.91443 0.84655 0.84370 0.90140 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.98 4.89 -26.73 -0.13 -2.11 16 12 C 0.05 0.70 4.84 -3.82 -0.02 0.68 16 13 N -0.52 -6.86 5.35 -230.45 -1.23 -8.09 16 14 C 0.04 0.40 6.70 -2.75 -0.02 0.38 16 15 C -0.13 -1.19 6.66 -25.38 -0.17 -1.36 16 16 C 0.08 0.81 4.19 -65.85 -0.28 0.53 16 17 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 18 N -0.84 -7.19 9.28 -3.09 -0.03 -7.21 16 19 C 0.04 0.51 5.04 -1.90 -0.01 0.50 16 20 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 21 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 22 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.91 7.18 -51.93 -0.37 0.53 16 27 H 0.03 0.49 7.97 -51.93 -0.41 0.08 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.73 8.05 -51.92 -0.42 0.31 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.34 2.26 9.07 -39.29 -0.36 1.90 16 34 H 0.34 2.57 9.07 -39.29 -0.36 2.22 16 35 H 0.08 1.01 7.77 -51.93 -0.40 0.60 16 36 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -31.43 286.32 -8.59 -40.02 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.45 Total: -1.04 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.30 Total: -17.80 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.49 Total: -43.11 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.43 -8.59 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385320478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.056 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds