Wall clock time and date at job start Mon Mar 30 2020 20:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48497 * 109.46887 * 269.99796 * 3 2 1 5 5 H 1.48499 * 109.46998 * 29.99964 * 3 2 1 6 6 H 1.48497 * 109.47067 * 149.99567 * 3 2 1 7 7 C 1.37879 * 119.99140 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00485 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99412 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46706 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46759 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47083 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47108 * 179.97438 * 12 11 10 14 14 C 1.46961 * 110.99781 * 169.99931 * 13 12 11 15 15 C 1.53049 * 109.36212 * 183.18915 * 14 13 12 16 16 N 1.46956 * 109.37889 * 301.58202 * 15 14 13 17 17 C 1.46998 * 110.85606 * 59.31765 * 16 15 14 18 18 C 1.46954 * 110.99536 * 293.79377 * 13 12 11 19 19 H 0.97008 * 119.99530 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47205 * 60.00418 * 9 7 2 21 21 H 1.08997 * 109.47595 * 300.00137 * 9 7 2 22 22 H 1.08997 * 109.47733 * 60.00083 * 10 9 7 23 23 H 1.09005 * 109.47026 * 299.99562 * 10 9 7 24 24 H 1.08999 * 109.47575 * 59.99833 * 11 10 9 25 25 H 1.09000 * 109.46973 * 299.99088 * 11 10 9 26 26 H 1.08999 * 109.47214 * 59.99413 * 12 11 10 27 27 H 1.09002 * 109.47008 * 299.99507 * 12 11 10 28 28 H 1.08997 * 109.49026 * 63.21842 * 14 13 12 29 29 H 1.09001 * 109.48575 * 303.15033 * 14 13 12 30 30 H 1.09002 * 109.49200 * 61.56352 * 15 14 13 31 31 H 1.09002 * 109.48985 * 181.60771 * 15 14 13 32 32 H 1.00899 * 111.00107 * 183.20040 * 16 15 14 33 33 H 1.09005 * 109.48570 * 180.72396 * 17 16 15 34 34 H 1.08997 * 109.50642 * 60.67078 * 17 16 15 35 35 H 1.09002 * 109.48968 * 296.77609 * 18 13 12 36 36 H 1.08993 * 109.49197 * 56.82899 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5513 -2.6369 0.0022 12 6 6.0612 -4.0795 0.0015 13 7 7.5302 -4.0796 0.0020 14 6 8.0567 -5.4309 0.2396 15 6 9.5844 -5.3749 0.3119 16 7 10.1120 -4.8209 -0.9428 17 6 9.5852 -3.4693 -1.1805 18 6 8.0573 -3.5253 -1.2528 19 1 -0.4850 0.8402 -0.0004 20 1 3.8745 -0.6803 0.8911 21 1 3.8752 -0.6806 -0.8888 22 1 3.6583 -3.1505 -0.8892 23 1 3.6576 -3.1508 0.8908 24 1 5.9140 -2.1234 0.8926 25 1 5.9153 -2.1229 -0.8874 26 1 5.6985 -4.5926 -0.8892 27 1 5.6972 -4.5940 0.8908 28 1 7.7550 -6.0874 -0.5765 29 1 7.6620 -5.8147 1.1804 30 1 9.8861 -4.7400 1.1450 31 1 9.9787 -6.3803 0.4596 32 1 11.1210 -4.8212 -0.9423 33 1 9.9798 -3.0854 -2.1213 34 1 9.8868 -2.8124 -0.3646 35 1 7.7557 -4.1602 -2.0858 36 1 7.6629 -2.5200 -1.4002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385395376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:10 Heat of formation + Delta-G solvation = -11.777576 kcal Electronic energy + Delta-G solvation = -14068.505407 eV Core-core repulsion = 11779.681768 eV Total energy + Delta-G solvation = -2288.823640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12748 -35.67442 -33.79635 -32.04839 -31.00846 -29.09565 -26.09842 -23.77637 -23.49817 -21.00062 -19.99824 -19.82269 -16.96645 -16.61256 -15.36818 -14.87127 -14.78957 -14.54675 -14.28274 -14.10408 -13.67601 -12.65325 -12.58725 -12.25734 -11.84698 -11.79263 -11.39771 -11.26558 -10.97801 -10.90259 -10.66390 -10.41719 -9.82024 -9.63832 -9.44985 -9.11813 -8.75610 -8.49701 -8.29220 -6.00477 -3.97881 3.33676 3.40765 3.45669 3.88302 3.99594 4.49162 4.77403 4.93050 5.03285 5.18140 5.26120 5.33666 5.37341 5.41244 5.53182 5.62622 5.76164 5.81774 5.85591 5.92135 6.08949 6.15266 6.42249 6.68065 6.70514 6.80185 6.92630 7.04375 7.10284 7.20569 7.37837 7.51023 7.84935 8.59079 9.04973 9.62657 11.13212 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061987 B = 0.005097 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.597271 B = 5492.428514 C = 5794.142658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.102 4.102 11 C -0.116 4.116 12 C 0.056 3.944 13 N -0.542 5.542 14 C 0.055 3.945 15 C 0.059 3.941 16 N -0.694 5.694 17 C 0.058 3.942 18 C 0.052 3.948 19 H 0.262 0.738 20 H 0.015 0.985 21 H 0.009 0.991 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.341 0.659 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.893 -8.682 -0.677 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.140 4.140 11 C -0.154 4.154 12 C -0.071 4.071 13 N -0.267 5.267 14 C -0.074 4.074 15 C -0.070 4.070 16 N -0.325 5.325 17 C -0.071 4.071 18 C -0.076 4.076 19 H 0.072 0.928 20 H 0.033 0.967 21 H 0.028 0.972 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.416 -8.575 -0.678 21.236 hybrid contribution 0.532 0.903 -0.031 1.049 sum 19.947 -7.672 -0.709 21.383 Atomic orbital electron populations 1.69930 1.06316 1.26800 1.51492 1.25051 0.94732 0.99205 0.94642 0.86758 0.80389 0.83576 0.78459 1.20351 1.21440 1.18982 1.21199 0.89713 0.94399 1.50437 0.91133 1.19568 0.96930 0.92498 0.96119 1.21427 0.91854 0.99771 1.00923 1.21703 0.97290 0.94520 1.01884 1.22210 0.85468 0.98735 1.00677 1.62194 1.08652 1.21367 1.34464 1.22144 0.94250 0.89994 1.00987 1.21989 0.95029 0.99521 0.90501 1.60525 1.12877 1.23134 1.35989 1.22021 0.95160 0.89192 1.00729 1.22213 0.93952 1.00765 0.90663 0.92820 0.96662 0.97234 0.93065 0.92834 0.91751 0.92633 0.94909 0.90870 0.94265 0.90412 0.94312 0.90547 0.84168 0.90449 0.94253 0.94215 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.12 -1.93 5.15 -26.73 -0.14 -2.06 16 12 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 13 N -0.54 -7.15 4.71 -234.46 -1.10 -8.25 16 14 C 0.05 0.62 5.61 -3.77 -0.02 0.60 16 15 C 0.06 0.57 6.72 -3.77 -0.03 0.55 16 16 N -0.69 -6.76 6.91 -113.60 -0.78 -7.54 16 17 C 0.06 0.60 6.72 -3.74 -0.03 0.58 16 18 C 0.05 0.65 5.41 -3.76 -0.02 0.63 16 19 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 20 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 21 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.90 6.49 -51.93 -0.34 0.57 16 26 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.34 2.58 8.90 -39.29 -0.35 2.23 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 1.07 6.34 -51.93 -0.33 0.74 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -31.41 282.98 -8.88 -40.29 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.43 Total: -3.26 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.93 Total: -15.31 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.12 Total: -43.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.41 -8.88 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds