Wall clock time and date at job start Mon Mar 30 2020 20:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48497 * 109.46887 * 269.99796 * 3 2 1 5 5 H 1.48499 * 109.46998 * 29.99964 * 3 2 1 6 6 H 1.48497 * 109.47067 * 149.99567 * 3 2 1 7 7 C 1.37879 * 119.99140 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00485 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99412 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46706 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46759 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47083 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47108 * 179.97438 * 12 11 10 14 14 C 1.46961 * 110.99781 * 169.99931 * 13 12 11 15 15 C 1.53049 * 109.36212 * 183.18915 * 14 13 12 16 16 N 1.46956 * 109.37889 * 301.58202 * 15 14 13 17 17 C 1.46998 * 110.85606 * 59.31765 * 16 15 14 18 18 C 1.46954 * 110.99536 * 293.79377 * 13 12 11 19 19 H 0.97008 * 119.99530 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47205 * 60.00418 * 9 7 2 21 21 H 1.08997 * 109.47595 * 300.00137 * 9 7 2 22 22 H 1.08997 * 109.47733 * 60.00083 * 10 9 7 23 23 H 1.09005 * 109.47026 * 299.99562 * 10 9 7 24 24 H 1.08999 * 109.47575 * 59.99833 * 11 10 9 25 25 H 1.09000 * 109.46973 * 299.99088 * 11 10 9 26 26 H 1.08999 * 109.47214 * 59.99413 * 12 11 10 27 27 H 1.09002 * 109.47008 * 299.99507 * 12 11 10 28 28 H 1.08997 * 109.49026 * 63.21842 * 14 13 12 29 29 H 1.09001 * 109.48575 * 303.15033 * 14 13 12 30 30 H 1.09002 * 109.49200 * 61.56352 * 15 14 13 31 31 H 1.09002 * 109.48985 * 181.60771 * 15 14 13 32 32 H 1.00899 * 111.00107 * 183.20040 * 16 15 14 33 33 H 1.09005 * 109.48570 * 180.72396 * 17 16 15 34 34 H 1.08997 * 109.50642 * 60.67078 * 17 16 15 35 35 H 1.09002 * 109.48968 * 296.77609 * 18 13 12 36 36 H 1.08993 * 109.49197 * 56.82899 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5513 -2.6369 0.0022 12 6 6.0612 -4.0795 0.0015 13 7 7.5302 -4.0796 0.0020 14 6 8.0567 -5.4309 0.2396 15 6 9.5844 -5.3749 0.3119 16 7 10.1120 -4.8209 -0.9428 17 6 9.5852 -3.4693 -1.1805 18 6 8.0573 -3.5253 -1.2528 19 1 -0.4850 0.8402 -0.0004 20 1 3.8745 -0.6803 0.8911 21 1 3.8752 -0.6806 -0.8888 22 1 3.6583 -3.1505 -0.8892 23 1 3.6576 -3.1508 0.8908 24 1 5.9140 -2.1234 0.8926 25 1 5.9153 -2.1229 -0.8874 26 1 5.6985 -4.5926 -0.8892 27 1 5.6972 -4.5940 0.8908 28 1 7.7550 -6.0874 -0.5765 29 1 7.6620 -5.8147 1.1804 30 1 9.8861 -4.7400 1.1450 31 1 9.9787 -6.3803 0.4596 32 1 11.1210 -4.8212 -0.9423 33 1 9.9798 -3.0854 -2.1213 34 1 9.8868 -2.8124 -0.3646 35 1 7.7557 -4.1602 -2.0858 36 1 7.6629 -2.5200 -1.4002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385395376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:09 Heat of formation + Delta-G solvation = -34.957577 kcal Electronic energy + Delta-G solvation = -14069.510568 eV Core-core repulsion = 11779.681768 eV Total energy + Delta-G solvation = -2289.828800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05356 -36.99242 -35.36858 -33.92552 -31.87381 -30.71226 -27.47729 -25.20365 -24.42450 -22.49663 -21.63708 -20.73021 -18.85368 -17.80027 -16.58642 -16.35991 -15.85933 -15.65528 -15.43634 -15.34674 -14.86433 -14.60652 -13.89633 -13.72392 -13.39303 -13.04954 -12.80976 -12.44214 -12.23162 -12.14723 -11.96280 -11.81101 -11.66039 -11.33342 -11.27977 -11.11393 -10.76349 -9.54298 -9.27253 -8.29812 -6.33993 1.35673 1.37889 1.50516 2.36614 2.88744 3.05579 3.28034 3.91415 3.96287 4.11991 4.17672 4.37102 4.38095 4.45978 4.48892 4.55070 4.62510 4.76383 4.81340 4.88470 4.91834 5.02136 5.07831 5.14502 5.18030 5.25002 5.56384 5.64115 5.68048 5.90860 6.03783 6.15306 6.29231 6.48592 6.74202 7.30897 8.87282 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061987 B = 0.005097 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.597271 B = 5492.428514 C = 5794.142658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.095 4.095 11 C -0.103 4.103 12 C 0.063 3.937 13 N -0.549 5.549 14 C 0.052 3.948 15 C 0.062 3.938 16 N -0.700 5.700 17 C 0.063 3.937 18 C 0.049 3.951 19 H 0.266 0.734 20 H 0.019 0.981 21 H 0.017 0.983 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.355 0.645 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.479 -8.184 -0.653 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.064 4.064 13 N -0.274 5.274 14 C -0.077 4.077 15 C -0.067 4.067 16 N -0.333 5.333 17 C -0.067 4.067 18 C -0.079 4.079 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.035 0.965 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.174 0.826 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.031 -8.101 -0.656 23.483 hybrid contribution -0.340 0.655 -0.044 0.740 sum 21.691 -7.445 -0.701 22.944 Atomic orbital electron populations 1.70085 1.08364 1.28188 1.52794 1.26076 0.95660 1.03703 0.94054 0.85600 0.79456 0.77976 0.79275 1.19035 1.20849 1.17026 1.21569 0.92399 0.93068 1.50335 0.95218 1.19536 0.93635 0.95369 0.96380 1.21297 0.94577 0.96957 1.00468 1.21511 0.94237 0.96251 1.02078 1.22044 0.86644 0.97011 1.00750 1.62193 1.07603 1.22654 1.34916 1.22244 0.95550 0.88772 1.01085 1.21991 0.93727 1.00639 0.90367 1.60508 1.14020 1.22696 1.36050 1.21977 0.93665 0.89593 1.01465 1.22262 0.95480 1.00166 0.89987 0.92488 0.96288 0.96464 0.93637 0.93328 0.91790 0.92129 0.95259 0.90489 0.94976 0.89616 0.94526 0.88568 0.82587 0.88945 0.94522 0.95116 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 45.24 27.47 68.60 1.88 47.12 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.78 5.15 30.60 0.16 -3.63 16 11 C -0.10 -3.26 5.15 30.60 0.16 -3.10 16 12 C 0.06 1.73 4.96 86.30 0.43 2.15 16 13 N -0.55 -13.53 4.71 -895.68 -4.22 -17.75 16 14 C 0.05 1.07 5.61 86.31 0.48 1.55 16 15 C 0.06 1.05 6.72 86.31 0.58 1.63 16 16 N -0.70 -11.88 6.91 -513.31 -3.54 -15.42 16 17 C 0.06 1.15 6.72 86.31 0.58 1.73 16 18 C 0.05 1.13 5.41 86.31 0.47 1.60 16 19 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 20 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 21 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 1.86 6.49 -2.39 -0.02 1.85 16 26 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 1.61 8.07 -2.39 -0.02 1.59 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.35 4.38 8.90 -89.69 -0.80 3.59 16 33 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 1.89 6.34 -2.39 -0.02 1.87 16 Total: -1.00 -67.34 282.98 -1.72 -69.06 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.17 Total: 7.60 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.69 Total: -29.70 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -7.46 Total: -94.08 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -67.34 -1.72 -69.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385395376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.104 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds