Wall clock time and date at job start Mon Mar 30 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 N 1.46895 * 109.47259 * 119.99777 * 2 1 3 5 5 C 1.46899 * 111.00282 * 300.00410 * 4 2 1 6 6 C 1.50705 * 109.47059 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00042 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99520 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99709 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46941 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47192 * 120.00508 * 10 8 6 13 13 H 1.48497 * 109.47338 * 240.00310 * 10 8 6 14 14 C 1.52999 * 109.47125 * 240.00237 * 2 1 3 15 15 H 1.08997 * 110.87680 * 52.38009 * 14 2 1 16 16 C 1.55143 * 110.98956 * 176.22225 * 14 2 1 17 17 C 1.54312 * 103.01836 * 153.74496 * 16 14 2 18 18 N 1.47442 * 107.23506 * 337.71465 * 17 16 14 19 19 C 1.47884 * 108.58352 * 359.04415 * 18 17 16 20 20 H 1.09000 * 109.47137 * 300.00172 * 1 2 3 21 21 H 1.09004 * 109.46813 * 59.99939 * 1 2 3 22 22 H 1.09003 * 109.46807 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47296 * 173.69763 * 3 2 1 24 24 H 1.08995 * 109.47678 * 293.70181 * 3 2 1 25 25 H 1.09006 * 109.47054 * 53.69847 * 3 2 1 26 26 H 1.00903 * 111.00538 * 176.04584 * 4 2 1 27 27 H 1.09002 * 109.47306 * 59.99827 * 5 4 2 28 28 H 1.08996 * 109.46738 * 299.99823 * 5 4 2 29 29 H 0.96991 * 120.00234 * 359.97438 * 9 8 6 30 30 H 1.08999 * 110.70570 * 272.12489 * 16 14 2 31 31 H 1.09004 * 110.70730 * 35.18400 * 16 14 2 32 32 H 1.08998 * 109.89359 * 97.12403 * 17 16 14 33 33 H 1.09005 * 109.88872 * 218.14695 * 17 16 14 34 34 H 1.00904 * 111.00175 * 121.28174 * 18 17 16 35 35 H 1.08999 * 110.35927 * 265.22546 * 19 18 17 36 36 H 1.09003 * 110.40829 * 142.87691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.5486 -0.0264 2.4211 6 6 2.0693 -0.7637 3.6279 7 1 2.6885 -1.6392 3.5001 8 6 1.7559 -0.3198 4.8951 9 7 1.0023 0.7466 5.0506 10 14 2.4019 -1.2334 6.3910 11 1 3.2205 -2.3907 5.9488 12 1 3.2396 -0.3178 7.2065 13 1 1.2595 -1.7174 7.2069 14 6 2.0400 -0.7212 -1.2493 15 1 1.5834 -0.3093 -2.1492 16 6 3.5879 -0.6596 -1.3335 17 6 3.9413 -1.9145 -2.1590 18 7 2.8118 -2.8536 -2.0316 19 6 1.7917 -2.2469 -1.1494 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1242 1.4446 0.1128 24 1 1.7717 1.9228 -0.9409 25 1 1.5874 1.9879 0.8283 26 1 3.0262 -0.7625 1.1910 27 1 0.4587 -0.0266 2.4379 28 1 1.9121 1.0011 2.4378 29 1 0.6672 1.2212 4.2739 30 1 3.9101 0.2446 -1.8498 31 1 4.0304 -0.7122 -0.3387 32 1 4.0814 -1.6429 -3.2053 33 1 4.8516 -2.3705 -1.7694 34 1 2.4218 -3.0750 -2.9355 35 1 1.9274 -2.5872 -0.1228 36 1 0.7899 -2.4922 -1.5020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388590882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:11 Heat of formation + Delta-G solvation = -9.978002 kcal Electronic energy + Delta-G solvation = -14968.349043 eV Core-core repulsion = 12679.603439 eV Total energy + Delta-G solvation = -2288.745604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.32794 -36.20712 -33.18699 -30.44271 -29.42816 -28.14975 -26.75955 -25.50377 -22.49989 -21.27951 -20.89376 -18.21451 -17.04871 -16.57627 -15.25448 -14.81245 -13.93451 -13.69835 -13.38188 -13.18910 -12.77596 -12.60125 -12.58680 -12.13970 -11.84661 -11.46893 -11.32011 -11.06824 -10.96590 -10.75948 -10.63665 -10.36555 -10.22089 -10.08860 -9.86534 -8.59556 -8.39200 -8.30214 -7.30246 -6.34987 -4.03032 3.46391 3.50184 3.64553 4.39636 4.54786 4.77045 4.88773 4.99150 5.29018 5.37057 5.42029 5.47490 5.61897 5.66142 5.72958 5.82047 5.95859 5.98047 6.12334 6.17437 6.21874 6.31128 6.38994 6.61091 6.69065 6.78152 6.99650 7.05335 7.24176 7.51965 7.84638 8.20822 8.51076 8.62853 8.91103 9.68239 11.04973 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.008025 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.605081 B = 3488.216105 C = 3826.081513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.117 3.883 3 C -0.176 4.176 4 N -0.668 5.668 5 C 0.180 3.820 6 C -0.593 4.593 7 H 0.055 0.945 8 C 0.014 3.986 9 N -0.917 5.917 10 Si 1.077 2.923 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.287 1.287 14 C -0.105 4.105 15 H 0.067 0.933 16 C -0.137 4.137 17 C 0.050 3.950 18 N -0.688 5.688 19 C 0.055 3.945 20 H 0.060 0.940 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.330 0.670 27 H 0.022 0.978 28 H -0.021 1.021 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.329 0.671 35 H 0.107 0.893 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -1.793 -13.864 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 C -0.235 4.235 4 N -0.299 5.299 5 C 0.053 3.947 6 C -0.632 4.632 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.553 5.553 10 Si 0.905 3.095 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.214 1.214 14 C -0.125 4.125 15 H 0.085 0.915 16 C -0.176 4.176 17 C -0.080 4.080 18 N -0.315 5.315 19 C -0.073 4.073 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.040 0.960 28 H -0.003 1.003 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.306 -2.701 -11.696 12.224 hybrid contribution 0.164 1.691 -2.314 2.871 sum 2.470 -1.010 -14.011 14.263 Atomic orbital electron populations 1.21841 0.94489 1.02041 1.00937 1.20707 0.95026 0.90679 0.91085 1.22543 1.01016 0.98678 1.01264 1.60764 1.15284 1.52741 1.01104 1.19730 0.95796 0.92137 0.86988 1.22092 1.34870 1.14468 0.91745 0.92625 1.25824 0.95379 0.96754 1.01000 1.70734 1.32614 1.17947 1.34052 0.83437 0.76051 0.75160 0.74832 1.21434 1.21521 1.21370 1.22742 0.95007 0.97394 0.97343 0.91465 1.22849 0.96167 0.97457 1.01106 1.22566 0.95458 0.91640 0.98294 1.61808 1.09754 1.43424 1.16494 1.23022 0.93179 0.91097 1.00024 0.92110 0.93647 0.92141 0.93038 0.93480 0.92151 0.85163 0.95986 1.00309 0.92311 0.91726 0.90514 0.93691 0.91051 0.85666 0.87498 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.13 37.16 0.30 -1.97 16 2 C 0.12 2.00 0.46 -131.60 -0.06 1.93 16 3 C -0.18 -2.91 7.62 37.16 0.28 -2.63 16 4 N -0.67 -13.91 4.69 -101.22 -0.47 -14.39 16 5 C 0.18 4.60 3.97 -4.97 -0.02 4.58 16 6 C -0.59 -17.00 9.32 -34.44 -0.32 -17.32 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.18 13.65 55.43 0.76 -27.43 16 10 Si 1.08 25.80 29.90 -169.99 -5.08 20.72 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 14 C -0.10 -1.49 2.42 -88.48 -0.21 -1.71 16 15 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.14 -1.84 5.15 -24.91 -0.13 -1.97 16 17 C 0.05 0.62 7.58 -2.84 -0.02 0.59 16 18 N -0.69 -9.17 7.39 -110.77 -0.82 -9.99 16 19 C 0.06 0.82 6.39 -2.28 -0.01 0.81 16 20 H 0.06 1.14 6.40 -51.93 -0.33 0.81 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.01 7.69 -51.93 -0.40 0.62 16 23 H 0.05 0.84 7.44 -51.92 -0.39 0.45 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.12 6.76 -51.93 -0.35 0.77 16 26 H 0.33 6.87 6.81 -39.29 -0.27 6.60 16 27 H 0.02 0.60 6.17 -51.93 -0.32 0.28 16 28 H -0.02 -0.55 6.31 -51.93 -0.33 -0.88 16 29 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.16 6.25 -51.93 -0.32 0.83 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.33 3.67 8.91 -39.29 -0.35 3.32 16 35 H 0.11 1.93 6.87 -51.93 -0.36 1.57 16 36 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -29.97 275.08 -7.64 -37.61 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.87 Total: 6.70 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.29 Total: -17.38 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.54 Total: -51.80 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.97 -7.64 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388590882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.637 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds