Wall clock time and date at job start Mon Mar 30 2020 20:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47556 * 2 1 4 4 H 1.09005 * 109.46883 * 54.99877 * 3 2 1 5 5 C 1.52990 * 109.47122 * 294.99990 * 3 2 1 6 6 C 1.53003 * 109.47189 * 174.99616 * 3 2 1 7 7 C 1.52998 * 109.47012 * 185.00382 * 6 3 2 8 8 H 1.09001 * 110.41877 * 304.14198 * 7 6 3 9 9 C 1.54798 * 110.30636 * 181.80150 * 7 6 3 10 10 C 1.54514 * 103.90974 * 217.11465 * 9 7 6 11 11 C 1.54480 * 104.18308 * 0.10211 * 10 9 7 12 12 H 1.08999 * 110.37029 * 265.07918 * 11 10 9 13 13 C 1.50697 * 110.37029 * 142.85321 * 11 10 9 14 14 H 1.07999 * 120.00414 * 359.97438 * 13 11 10 15 15 C 1.37883 * 119.99623 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00120 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99744 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47084 * 90.00034 * 17 15 13 19 19 H 1.48498 * 109.46805 * 209.99793 * 17 15 13 20 20 H 1.48496 * 109.47190 * 329.99896 * 17 15 13 21 21 O 1.44416 * 110.37691 * 66.45640 * 7 6 3 22 22 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47063 * 300.00022 * 1 2 3 24 24 H 1.09003 * 109.46466 * 59.99753 * 1 2 3 25 25 H 1.08997 * 109.47517 * 239.99738 * 2 1 3 26 26 H 1.09006 * 109.47107 * 119.99887 * 2 1 3 27 27 H 1.08996 * 109.47490 * 59.99678 * 5 3 2 28 28 H 1.09004 * 109.47189 * 179.97438 * 5 3 2 29 29 H 1.09005 * 109.47149 * 299.99724 * 5 3 2 30 30 H 1.09003 * 109.46707 * 65.00255 * 6 3 2 31 31 H 1.09002 * 109.46843 * 305.00152 * 6 3 2 32 32 H 1.09004 * 110.56077 * 98.53468 * 9 7 6 33 33 H 1.09004 * 110.61235 * 335.72198 * 9 7 6 34 34 H 1.09002 * 110.51267 * 241.38657 * 10 9 7 35 35 H 1.08994 * 110.51194 * 118.81318 * 10 9 7 36 36 H 0.97006 * 120.00212 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 4.0646 2.8848 0.2513 8 1 3.7183 3.4823 -0.5920 9 6 5.6101 2.9120 0.3345 10 6 5.9082 4.0495 1.3369 11 6 4.5122 4.5723 1.7422 12 1 4.2346 5.4285 1.1275 13 6 4.4962 4.9481 3.2015 14 1 5.3882 4.8314 3.7990 15 6 3.3426 5.4410 3.7737 16 7 2.2566 5.5837 3.0460 17 14 3.3225 5.9062 5.5828 18 1 3.7098 7.3321 5.7316 19 1 1.9571 5.7044 6.1306 20 1 4.2846 5.0520 6.3243 21 8 3.6179 3.4654 1.4959 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5491 2.1252 -1.3969 28 1 1.9984 3.1543 -1.3071 29 1 2.0700 1.5874 -2.1491 30 1 4.0030 0.9834 -0.7596 31 1 3.8570 0.8798 1.0115 32 1 6.0420 3.1391 -0.6403 33 1 5.9910 1.9623 0.7101 34 1 6.4874 4.8388 0.8577 35 1 6.4385 3.6625 2.2069 36 1 1.4451 5.9308 3.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394414959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:15 Heat of formation + Delta-G solvation = -80.569780 kcal Electronic energy + Delta-G solvation = -14773.532345 eV Core-core repulsion = 12449.432900 eV Total energy + Delta-G solvation = -2324.099445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.37033 -36.17377 -32.64875 -30.95664 -30.66444 -28.35509 -26.34419 -24.42964 -22.55637 -20.54772 -19.66449 -19.24848 -16.62665 -15.41248 -14.91704 -14.49499 -14.14385 -13.93686 -13.75296 -12.98034 -12.55341 -12.40286 -11.79190 -11.78454 -11.67937 -11.39685 -11.02197 -10.94252 -10.83804 -10.55890 -10.35703 -10.18420 -10.04833 -9.93952 -9.59093 -9.43457 -9.02936 -8.55417 -7.98073 -5.98284 -4.10188 3.32415 3.39013 3.42708 4.44741 5.05440 5.08103 5.24204 5.34650 5.53043 5.66622 5.68136 5.73300 5.86910 5.87778 5.93895 6.05227 6.11061 6.19112 6.27909 6.33479 6.36738 6.41124 6.53257 6.58335 6.74154 6.78578 6.80724 6.89211 6.99092 7.04822 7.56962 7.92062 8.28829 8.62666 9.02088 9.59931 11.09694 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.009031 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.907310 B = 3099.563245 C = 3735.041782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.101 4.101 7 C 0.063 3.937 8 H 0.049 0.951 9 C -0.151 4.151 10 C -0.147 4.147 11 C 0.206 3.794 12 H 0.024 0.976 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.076 3.924 16 N -0.865 5.865 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.348 6.348 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -7.845 -7.073 10.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.110 4.110 4 H 0.103 0.897 5 C -0.202 4.202 6 C -0.138 4.138 7 C 0.004 3.996 8 H 0.067 0.933 9 C -0.189 4.189 10 C -0.185 4.185 11 C 0.150 3.850 12 H 0.042 0.958 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.501 5.501 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.267 6.267 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.186 -7.858 -6.940 10.485 hybrid contribution 0.141 0.325 0.796 0.871 sum -0.045 -7.533 -6.144 9.720 Atomic orbital electron populations 1.21814 0.96367 1.00738 1.02054 1.21572 0.95578 0.97170 1.01180 1.21113 0.95667 0.95171 0.99060 0.89664 1.21881 1.00622 1.00950 0.96763 1.21611 0.95220 0.96113 1.00883 1.22867 0.91873 0.93644 0.91189 0.93286 1.23020 0.97544 0.99429 0.98885 1.23034 1.01164 0.96586 0.97745 1.20474 0.82531 0.85742 0.96253 0.95825 1.21047 0.97505 1.43419 0.94581 0.91972 1.25084 0.95540 0.94398 0.97910 1.70033 1.01174 1.43168 1.35724 0.86622 0.77421 0.78728 0.85346 1.20553 1.21098 1.19768 1.89468 1.55076 1.46948 1.35230 0.93507 0.92586 0.92717 0.92765 0.92325 0.93108 0.92242 0.93672 0.92427 0.91814 0.92655 0.92142 0.92990 0.91974 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.12 -1.62 5.40 -26.73 -0.14 -1.76 16 3 C -0.09 -1.52 2.35 -90.62 -0.21 -1.73 16 4 H 0.08 1.73 7.79 -51.93 -0.40 1.32 16 5 C -0.15 -2.19 8.72 37.15 0.32 -1.87 16 6 C -0.10 -1.73 4.33 -26.73 -0.12 -1.85 16 7 C 0.06 1.29 3.10 -25.78 -0.08 1.21 16 8 H 0.05 1.00 6.45 -51.93 -0.33 0.66 16 9 C -0.15 -2.83 6.65 -24.99 -0.17 -3.00 16 10 C -0.15 -3.20 6.61 -25.16 -0.17 -3.37 16 11 C 0.21 5.47 3.05 -27.11 -0.08 5.39 16 12 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.53 -15.20 8.78 -34.44 -0.30 -15.51 16 14 H 0.06 1.74 7.57 -52.49 -0.40 1.34 16 15 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 16 N -0.86 -26.04 13.07 55.43 0.72 -25.31 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 O -0.35 -9.16 10.32 -35.23 -0.36 -9.53 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 28 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 285.07 15.07 4.30 4.30 Total: -1.00 -30.26 285.07 -7.38 -37.63 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.33 Total: -1.86 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.68 Total: -21.94 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.72 Total: -25.31 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.36 Total: -9.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.26 -7.38 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.939 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds