Wall clock time and date at job start Mon Mar 30 2020 20:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47556 * 2 1 4 4 H 1.09005 * 109.46883 * 54.99877 * 3 2 1 5 5 C 1.52990 * 109.47122 * 294.99990 * 3 2 1 6 6 C 1.53003 * 109.47189 * 174.99616 * 3 2 1 7 7 C 1.52998 * 109.47012 * 185.00382 * 6 3 2 8 8 H 1.09001 * 110.41877 * 304.14198 * 7 6 3 9 9 C 1.54798 * 110.30636 * 181.80150 * 7 6 3 10 10 C 1.54514 * 103.90974 * 217.11465 * 9 7 6 11 11 C 1.54480 * 104.18308 * 0.10211 * 10 9 7 12 12 H 1.08999 * 110.37029 * 265.07918 * 11 10 9 13 13 C 1.50697 * 110.37029 * 142.85321 * 11 10 9 14 14 H 1.07999 * 120.00414 * 359.97438 * 13 11 10 15 15 C 1.37883 * 119.99623 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00120 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99744 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47084 * 90.00034 * 17 15 13 19 19 H 1.48498 * 109.46805 * 209.99793 * 17 15 13 20 20 H 1.48496 * 109.47190 * 329.99896 * 17 15 13 21 21 O 1.44416 * 110.37691 * 66.45640 * 7 6 3 22 22 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47063 * 300.00022 * 1 2 3 24 24 H 1.09003 * 109.46466 * 59.99753 * 1 2 3 25 25 H 1.08997 * 109.47517 * 239.99738 * 2 1 3 26 26 H 1.09006 * 109.47107 * 119.99887 * 2 1 3 27 27 H 1.08996 * 109.47490 * 59.99678 * 5 3 2 28 28 H 1.09004 * 109.47189 * 179.97438 * 5 3 2 29 29 H 1.09005 * 109.47149 * 299.99724 * 5 3 2 30 30 H 1.09003 * 109.46707 * 65.00255 * 6 3 2 31 31 H 1.09002 * 109.46843 * 305.00152 * 6 3 2 32 32 H 1.09004 * 110.56077 * 98.53468 * 9 7 6 33 33 H 1.09004 * 110.61235 * 335.72198 * 9 7 6 34 34 H 1.09002 * 110.51267 * 241.38657 * 10 9 7 35 35 H 1.08994 * 110.51194 * 118.81318 * 10 9 7 36 36 H 0.97006 * 120.00212 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 6 4.0646 2.8848 0.2513 8 1 3.7183 3.4823 -0.5920 9 6 5.6101 2.9120 0.3345 10 6 5.9082 4.0495 1.3369 11 6 4.5122 4.5723 1.7422 12 1 4.2346 5.4285 1.1275 13 6 4.4962 4.9481 3.2015 14 1 5.3882 4.8314 3.7990 15 6 3.3426 5.4410 3.7737 16 7 2.2566 5.5837 3.0460 17 14 3.3225 5.9062 5.5828 18 1 3.7098 7.3321 5.7316 19 1 1.9571 5.7044 6.1306 20 1 4.2846 5.0520 6.3243 21 8 3.6179 3.4654 1.4959 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5491 2.1252 -1.3969 28 1 1.9984 3.1543 -1.3071 29 1 2.0700 1.5874 -2.1491 30 1 4.0030 0.9834 -0.7596 31 1 3.8570 0.8798 1.0115 32 1 6.0420 3.1391 -0.6403 33 1 5.9910 1.9623 0.7101 34 1 6.4874 4.8388 0.8577 35 1 6.4385 3.6625 2.2069 36 1 1.4451 5.9308 3.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:15 Heat of formation + Delta-G solvation = -98.311211 kcal Electronic energy + Delta-G solvation = -14774.301671 eV Core-core repulsion = 12449.432900 eV Total energy + Delta-G solvation = -2324.868771 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08830 -37.55679 -34.74536 -32.61789 -32.24859 -29.90208 -27.99018 -26.03469 -24.09931 -22.27396 -21.32338 -20.58115 -18.76299 -17.06516 -16.63495 -16.16144 -15.86591 -15.51338 -15.15852 -14.34999 -14.19823 -14.02523 -13.56043 -13.21663 -12.95523 -12.84231 -12.70928 -12.45710 -12.38389 -12.19879 -11.95961 -11.92963 -11.47506 -11.36686 -11.21853 -11.00043 -10.90825 -10.70443 -9.96890 -8.17465 -6.37813 1.38207 1.40417 1.51164 2.39043 3.05124 3.66784 3.78496 4.03108 4.12341 4.19649 4.25606 4.34288 4.45543 4.59307 4.66984 4.73102 4.75168 4.84685 4.98740 4.99298 5.03519 5.07719 5.12615 5.20648 5.23477 5.27357 5.39517 5.42177 5.50927 5.62442 5.67241 5.72585 6.16451 6.57650 6.94922 7.37408 8.91158 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.009031 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.907310 B = 3099.563245 C = 3735.041782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.034 0.966 5 C -0.140 4.140 6 C -0.094 4.094 7 C 0.052 3.948 8 H 0.045 0.955 9 C -0.140 4.140 10 C -0.142 4.142 11 C 0.196 3.804 12 H -0.013 1.013 13 C -0.553 4.553 14 H 0.064 0.936 15 C 0.020 3.980 16 N -0.904 5.904 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.265 1.265 21 O -0.384 6.384 22 H 0.068 0.932 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -9.374 -7.722 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.111 4.111 4 H 0.053 0.947 5 C -0.197 4.197 6 C -0.132 4.132 7 C -0.007 4.007 8 H 0.063 0.937 9 C -0.177 4.177 10 C -0.180 4.180 11 C 0.140 3.860 12 H 0.005 0.995 13 C -0.590 4.590 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.189 1.189 21 O -0.304 6.304 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.681 -9.391 -7.596 12.098 hybrid contribution -0.131 0.804 0.930 1.236 sum 0.550 -8.587 -6.667 10.885 Atomic orbital electron populations 1.21811 0.95680 1.01966 1.01465 1.21525 0.96200 0.94971 1.02211 1.21061 0.95319 0.96808 0.97880 0.94734 1.21833 1.01301 0.99666 0.96918 1.21611 0.95623 0.93804 1.02123 1.23192 0.93451 0.95231 0.88778 0.93667 1.22993 0.95996 0.99007 0.99718 1.22923 0.98207 0.98144 0.98713 1.20377 0.85425 0.85337 0.94846 0.99507 1.21482 0.97795 1.43735 0.95976 0.91768 1.26007 0.95062 0.94258 1.02867 1.70180 1.01819 1.44267 1.37841 0.85494 0.77525 0.78948 0.79276 1.19225 1.20815 1.18918 1.89387 1.56051 1.46820 1.38118 0.91335 0.94502 0.92056 0.90201 0.92700 0.92359 0.94706 0.90793 0.88690 0.92663 0.89405 0.90372 0.91349 0.92250 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.67 71.98 0.70 -2.92 16 2 C -0.11 -2.86 5.40 30.59 0.17 -2.69 16 3 C -0.09 -3.02 2.35 -10.80 -0.03 -3.04 16 4 H 0.03 1.47 7.79 -2.38 -0.02 1.45 16 5 C -0.14 -4.09 8.72 71.98 0.63 -3.46 16 6 C -0.09 -3.10 4.33 30.59 0.13 -2.97 16 7 C 0.05 2.10 3.10 31.21 0.10 2.20 16 8 H 0.05 1.85 6.45 -2.39 -0.02 1.84 16 9 C -0.14 -4.93 6.65 31.72 0.21 -4.72 16 10 C -0.14 -6.09 6.61 31.61 0.21 -5.88 16 11 C 0.20 10.78 3.05 30.35 0.09 10.87 16 12 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 13 C -0.55 -32.63 8.78 25.60 0.22 -32.40 16 14 H 0.06 3.64 7.57 -2.91 -0.02 3.62 16 15 C 0.02 1.17 5.43 84.66 0.46 1.63 16 16 N -0.90 -56.47 13.07 21.45 0.28 -56.19 16 17 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 21 O -0.38 -20.93 10.32 -148.98 -1.54 -22.47 16 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.36 6.56 -2.39 -0.02 1.35 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 1.58 6.56 -2.39 -0.02 1.57 16 28 H 0.03 1.16 6.50 -2.38 -0.02 1.15 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.08 2.49 7.88 -2.39 -0.02 2.47 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 35 H 0.06 2.54 7.70 -2.39 -0.02 2.52 16 36 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -67.96 285.07 4.67 -63.28 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.02 Total: 11.39 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.89 Total: -43.39 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.54 Total: -22.47 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.96 4.67 -63.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.028 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds