Wall clock time and date at job start Mon Mar 30 2020 20:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99437 * 2 1 4 4 C 1.50702 * 109.47030 * 66.05256 * 3 2 1 5 5 H 1.08003 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99979 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00130 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99721 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47288 * 60.00563 * 8 6 4 10 10 H 1.48504 * 109.47184 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47264 * 300.00116 * 8 6 4 12 12 C 1.46902 * 111.00048 * 236.05086 * 2 1 3 13 13 H 1.09005 * 112.90559 * 53.42932 * 12 2 1 14 14 C 1.53780 * 113.61274 * 184.67842 * 12 2 1 15 15 C 1.53785 * 87.17210 * 140.02402 * 14 12 2 16 16 H 1.08994 * 113.61284 * 89.07139 * 15 14 12 17 17 N 1.46896 * 113.61571 * 219.98209 * 15 14 12 18 18 C 1.53786 * 87.07927 * 334.52539 * 15 14 12 19 19 C 1.53002 * 113.61236 * 139.98104 * 18 15 14 20 20 C 1.52996 * 113.61525 * 270.79826 * 18 15 14 21 21 H 1.09004 * 109.46677 * 187.36288 * 1 2 3 22 22 H 1.09004 * 109.47507 * 307.36050 * 1 2 3 23 23 H 1.08995 * 109.47127 * 67.36540 * 1 2 3 24 24 H 1.09003 * 109.46697 * 186.04495 * 3 2 1 25 25 H 1.08996 * 109.47363 * 306.04720 * 3 2 1 26 26 H 0.96994 * 120.00438 * 180.02562 * 7 6 4 27 27 H 1.08997 * 113.61492 * 25.43569 * 14 12 2 28 28 H 1.08997 * 113.61492 * 254.61426 * 14 12 2 29 29 H 1.00899 * 110.99756 * 280.49439 * 17 15 14 30 30 H 1.00900 * 111.00415 * 44.44251 * 17 15 14 31 31 H 1.08996 * 109.47410 * 79.50831 * 19 18 15 32 32 H 1.09000 * 109.47019 * 199.50811 * 19 18 15 33 33 H 1.08999 * 109.47157 * 319.50112 * 19 18 15 34 34 H 1.09005 * 109.47143 * 56.15567 * 20 18 15 35 35 H 1.09001 * 109.47501 * 176.14961 * 20 18 15 36 36 H 1.08997 * 109.47365 * 296.14955 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0486 6 6 2.0275 3.3492 1.5290 7 7 2.7125 4.0017 0.6155 8 14 1.5825 4.1867 3.1383 9 1 2.1735 3.4292 4.2706 10 1 2.1147 5.5732 3.1384 11 1 0.1053 4.2241 3.2850 12 6 1.9955 -0.7659 -1.1377 13 1 1.5890 -0.4379 -2.0944 14 6 3.5273 -0.9013 -1.1330 15 6 3.3244 -2.3510 -1.6043 16 1 3.2806 -2.4556 -2.6883 17 7 4.2428 -3.3087 -0.9740 18 6 1.9412 -2.2920 -0.9347 19 6 0.8390 -2.9791 -1.7434 20 6 1.9530 -2.7175 0.5348 21 1 -0.3633 -1.0192 0.1317 22 1 -0.3634 0.6236 0.8168 23 1 -0.3633 0.3955 -0.9485 24 1 3.0796 1.3445 -0.1082 25 1 1.5610 1.9274 -0.8309 26 1 2.9876 4.9175 0.7778 27 1 3.9695 -0.8229 -0.1399 28 1 4.0238 -0.2685 -1.8686 29 1 5.1513 -3.2803 -1.4120 30 1 4.3145 -3.1414 0.0185 31 1 0.8953 -4.0570 -1.5917 32 1 -0.1342 -2.6160 -1.4130 33 1 0.9706 -2.7537 -2.8017 34 1 2.6667 -2.1043 1.0850 35 1 0.9577 -2.5857 0.9593 36 1 2.2428 -3.7658 0.6072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405227974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:25 Heat of formation + Delta-G solvation = 15.001769 kcal Electronic energy + Delta-G solvation = -15013.068109 eV Core-core repulsion = 12725.405709 eV Total energy + Delta-G solvation = -2287.662400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86886 -35.25972 -32.50514 -31.59781 -29.86010 -27.16064 -27.01624 -24.90377 -22.70700 -22.06949 -20.04373 -17.85543 -16.32553 -15.70497 -15.27183 -14.61351 -14.50762 -13.84248 -13.30272 -13.04901 -12.84408 -12.65039 -11.91375 -11.77837 -11.69377 -11.40432 -11.29488 -11.11542 -10.88405 -10.80233 -10.50731 -10.37171 -10.12484 -9.74794 -9.46574 -9.07263 -8.43552 -8.33842 -7.17892 -6.01360 -4.02428 3.33392 3.37347 3.40338 4.42649 4.68288 4.86547 4.96820 5.10201 5.27044 5.33276 5.43487 5.62880 5.84386 5.91760 6.00627 6.09101 6.19200 6.24384 6.34933 6.35172 6.36963 6.47913 6.58459 6.74119 6.87086 6.94179 7.32915 7.37140 7.39259 7.63772 7.83363 8.14540 8.25896 8.61151 9.05641 9.61545 11.09471 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044207 B = 0.007966 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.233792 B = 3514.252207 C = 3694.958083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.523 5.523 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.066 3.934 13 H 0.050 0.950 14 C -0.161 4.161 15 C 0.075 3.925 16 H 0.094 0.906 17 N -0.838 5.838 18 C -0.066 4.066 19 C -0.132 4.132 20 C -0.106 4.106 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.031 0.969 25 H -0.014 1.014 26 H 0.261 0.739 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.334 0.666 30 H 0.344 0.656 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -11.612 -3.585 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.247 5.247 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.044 4.044 13 H 0.067 0.933 14 C -0.201 4.201 15 C -0.037 4.037 16 H 0.112 0.888 17 N -0.366 5.366 18 C -0.067 4.067 19 C -0.189 4.189 20 C -0.164 4.164 21 H 0.064 0.936 22 H 0.091 0.909 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.004 0.996 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.410 -12.226 -3.431 12.705 hybrid contribution 0.068 2.034 0.216 2.047 sum -0.342 -10.192 -3.215 10.693 Atomic orbital electron populations 1.22204 0.89213 0.99732 0.99926 1.62277 1.06571 1.17387 1.38433 1.19682 0.95516 0.81761 0.96238 1.21148 1.34667 0.96898 1.01767 0.91975 1.24988 0.95382 0.97372 0.96917 1.69948 1.38452 1.11463 1.34070 0.86578 0.78688 0.78346 0.83886 1.20203 1.21395 1.20321 1.23011 0.94941 0.93313 0.93153 0.93263 1.23748 0.96933 0.97458 1.01954 1.22892 0.93604 0.89309 0.97935 0.88792 1.58734 1.14625 1.54821 1.08410 1.22040 0.93624 0.94655 0.96404 1.21710 0.98247 1.00049 0.98930 1.21237 1.02347 0.99357 0.93423 0.93599 0.90861 0.97485 0.95120 0.99601 0.92945 0.89237 0.92297 0.85349 0.84253 0.92814 0.92848 0.93323 0.91898 0.92749 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.36 60.06 0.56 1.32 16 2 N -0.52 -11.19 3.80 -235.17 -0.89 -12.09 16 3 C 0.19 5.06 4.62 -4.97 -0.02 5.03 16 4 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 5 H 0.06 1.73 7.15 -52.48 -0.38 1.36 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.07 1.19 2.64 -66.76 -0.18 1.02 16 13 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 14 C -0.16 -2.70 5.92 -25.92 -0.15 -2.85 16 15 C 0.08 1.05 4.50 -66.90 -0.30 0.75 16 16 H 0.09 1.25 8.01 -51.93 -0.42 0.83 16 17 N -0.84 -10.31 9.19 -3.98 -0.04 -10.35 16 18 C -0.07 -0.99 1.08 -153.55 -0.17 -1.16 16 19 C -0.13 -1.77 9.17 37.16 0.34 -1.43 16 20 C -0.11 -1.61 7.08 37.16 0.26 -1.35 16 21 H 0.05 0.79 6.66 -51.93 -0.35 0.45 16 22 H 0.07 1.56 6.69 -51.93 -0.35 1.22 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.03 0.85 7.02 -51.93 -0.36 0.49 16 25 H -0.01 -0.39 8.12 -51.93 -0.42 -0.82 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.09 1.63 7.55 -51.93 -0.39 1.24 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.33 3.53 9.08 -39.29 -0.36 3.17 16 30 H 0.34 4.25 7.42 -39.29 -0.29 3.96 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.72 7.51 -51.93 -0.39 0.33 16 33 H 0.05 0.61 8.01 -51.93 -0.42 0.20 16 34 H 0.06 1.05 7.04 -51.93 -0.37 0.68 16 35 H 0.05 0.85 7.43 -51.93 -0.39 0.47 16 36 H 0.05 0.67 7.82 -51.93 -0.41 0.26 16 LS Contribution 281.71 15.07 4.25 4.25 Total: -1.00 -29.34 281.71 -7.11 -36.45 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.10 Total: 2.96 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.04 Total: -11.78 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.19 Total: -48.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.34 -7.11 -36.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405227974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.448 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds