Wall clock time and date at job start Mon Mar 30 2020 20:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99437 * 2 1 4 4 C 1.50702 * 109.47030 * 66.05256 * 3 2 1 5 5 H 1.08003 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99979 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00130 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99721 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47288 * 60.00563 * 8 6 4 10 10 H 1.48504 * 109.47184 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47264 * 300.00116 * 8 6 4 12 12 C 1.46902 * 111.00048 * 236.05086 * 2 1 3 13 13 H 1.09005 * 112.90559 * 53.42932 * 12 2 1 14 14 C 1.53780 * 113.61274 * 184.67842 * 12 2 1 15 15 C 1.53785 * 87.17210 * 140.02402 * 14 12 2 16 16 H 1.08994 * 113.61284 * 89.07139 * 15 14 12 17 17 N 1.46896 * 113.61571 * 219.98209 * 15 14 12 18 18 C 1.53786 * 87.07927 * 334.52539 * 15 14 12 19 19 C 1.53002 * 113.61236 * 139.98104 * 18 15 14 20 20 C 1.52996 * 113.61525 * 270.79826 * 18 15 14 21 21 H 1.09004 * 109.46677 * 187.36288 * 1 2 3 22 22 H 1.09004 * 109.47507 * 307.36050 * 1 2 3 23 23 H 1.08995 * 109.47127 * 67.36540 * 1 2 3 24 24 H 1.09003 * 109.46697 * 186.04495 * 3 2 1 25 25 H 1.08996 * 109.47363 * 306.04720 * 3 2 1 26 26 H 0.96994 * 120.00438 * 180.02562 * 7 6 4 27 27 H 1.08997 * 113.61492 * 25.43569 * 14 12 2 28 28 H 1.08997 * 113.61492 * 254.61426 * 14 12 2 29 29 H 1.00899 * 110.99756 * 280.49439 * 17 15 14 30 30 H 1.00900 * 111.00415 * 44.44251 * 17 15 14 31 31 H 1.08996 * 109.47410 * 79.50831 * 19 18 15 32 32 H 1.09000 * 109.47019 * 199.50811 * 19 18 15 33 33 H 1.08999 * 109.47157 * 319.50112 * 19 18 15 34 34 H 1.09005 * 109.47143 * 56.15567 * 20 18 15 35 35 H 1.09001 * 109.47501 * 176.14961 * 20 18 15 36 36 H 1.08997 * 109.47365 * 296.14955 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0486 6 6 2.0275 3.3492 1.5290 7 7 2.7125 4.0017 0.6155 8 14 1.5825 4.1867 3.1383 9 1 2.1735 3.4292 4.2706 10 1 2.1147 5.5732 3.1384 11 1 0.1053 4.2241 3.2850 12 6 1.9955 -0.7659 -1.1377 13 1 1.5890 -0.4379 -2.0944 14 6 3.5273 -0.9013 -1.1330 15 6 3.3244 -2.3510 -1.6043 16 1 3.2806 -2.4556 -2.6883 17 7 4.2428 -3.3087 -0.9740 18 6 1.9412 -2.2920 -0.9347 19 6 0.8390 -2.9791 -1.7434 20 6 1.9530 -2.7175 0.5348 21 1 -0.3633 -1.0192 0.1317 22 1 -0.3634 0.6236 0.8168 23 1 -0.3633 0.3955 -0.9485 24 1 3.0796 1.3445 -0.1082 25 1 1.5610 1.9274 -0.8309 26 1 2.9876 4.9175 0.7778 27 1 3.9695 -0.8229 -0.1399 28 1 4.0238 -0.2685 -1.8686 29 1 5.1513 -3.2803 -1.4120 30 1 4.3145 -3.1414 0.0185 31 1 0.8953 -4.0570 -1.5917 32 1 -0.1342 -2.6160 -1.4130 33 1 0.9706 -2.7537 -2.8017 34 1 2.6667 -2.1043 1.0850 35 1 0.9577 -2.5857 0.9593 36 1 2.2428 -3.7658 0.6072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405227974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:25 Heat of formation + Delta-G solvation = -5.488905 kcal Electronic energy + Delta-G solvation = -15013.956652 eV Core-core repulsion = 12725.405709 eV Total energy + Delta-G solvation = -2288.550942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20625 -36.98793 -34.52890 -32.83333 -31.14435 -29.20327 -28.19679 -26.60088 -24.50130 -23.32537 -21.72549 -19.20089 -18.41434 -16.90247 -16.85766 -16.43290 -15.92570 -15.45193 -14.77266 -14.56553 -14.27370 -14.02765 -13.72640 -13.26174 -13.03295 -12.83964 -12.79667 -12.63024 -12.58990 -12.42504 -12.32643 -12.02068 -11.64686 -11.52118 -10.90079 -10.78040 -10.61725 -9.45692 -8.97417 -8.21013 -6.31050 1.39279 1.42439 1.50352 2.39075 3.11111 3.32313 3.62263 3.62388 3.80979 4.01577 4.05907 4.45835 4.48727 4.62546 4.68092 4.70814 4.81364 4.95010 4.98441 5.05548 5.09944 5.17589 5.22332 5.27676 5.30585 5.34439 5.57565 5.65790 5.72257 6.07835 6.26643 6.35942 6.67149 6.72234 6.86320 7.38683 8.89841 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044207 B = 0.007966 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.233792 B = 3514.252207 C = 3694.958083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.523 5.523 3 C 0.211 3.789 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.050 3.950 13 H 0.044 0.956 14 C -0.165 4.165 15 C 0.096 3.904 16 H 0.109 0.891 17 N -0.831 5.831 18 C -0.057 4.057 19 C -0.129 4.129 20 C -0.101 4.101 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.005 0.995 24 H 0.006 0.994 25 H -0.049 1.049 26 H 0.264 0.736 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.347 0.653 30 H 0.344 0.656 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -13.204 -3.143 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.247 5.247 3 C 0.085 3.915 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.060 4.060 13 H 0.062 0.938 14 C -0.205 4.205 15 C -0.017 4.017 16 H 0.127 0.873 17 N -0.360 5.360 18 C -0.058 4.058 19 C -0.186 4.186 20 C -0.158 4.158 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.023 0.977 24 H 0.024 0.976 25 H -0.032 1.032 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.859 -13.850 -2.995 14.196 hybrid contribution 0.229 2.501 0.036 2.511 sum -0.629 -11.349 -2.959 11.745 Atomic orbital electron populations 1.22190 0.88191 1.01208 0.99057 1.62229 1.07517 1.14550 1.40402 1.19303 0.93842 0.84065 0.94333 1.21468 1.34716 0.97507 1.02420 0.91911 1.25922 0.95073 0.98089 1.00674 1.70084 1.39443 1.11867 1.36233 0.85449 0.78819 0.77178 0.79250 1.19277 1.20869 1.19270 1.23250 0.95757 0.95268 0.91707 0.93845 1.23765 0.95817 1.00001 1.00922 1.22747 0.93136 0.87231 0.98630 0.87298 1.58726 1.15300 1.53445 1.08544 1.21995 0.95140 0.91777 0.96938 1.21686 0.97178 1.00699 0.99038 1.21183 1.01449 1.00115 0.93053 0.90484 0.92701 0.97679 0.97564 1.03187 0.92766 0.91047 0.93177 0.83915 0.84170 0.91249 0.93011 0.92460 0.93921 0.93295 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.36 127.69 1.20 2.86 16 2 N -0.52 -22.77 3.80 -897.94 -3.41 -26.18 16 3 C 0.21 11.49 4.62 85.56 0.40 11.88 16 4 C -0.52 -30.10 8.41 25.60 0.22 -29.89 16 5 H 0.06 3.53 7.15 -2.91 -0.02 3.51 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 8 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.05 1.80 2.64 45.53 0.12 1.92 16 13 H 0.04 1.63 8.10 -2.38 -0.02 1.61 16 14 C -0.16 -5.56 5.92 31.12 0.18 -5.38 16 15 C 0.10 2.48 4.50 45.45 0.20 2.68 16 16 H 0.11 2.58 8.01 -2.39 -0.02 2.56 16 17 N -0.83 -18.41 9.19 -166.49 -1.53 -19.95 16 18 C -0.06 -1.61 1.08 -51.56 -0.06 -1.67 16 19 C -0.13 -3.06 9.17 71.98 0.66 -2.40 16 20 C -0.10 -2.86 7.08 71.98 0.51 -2.35 16 21 H 0.08 2.55 6.66 -2.39 -0.02 2.54 16 22 H 0.05 2.35 6.69 -2.38 -0.02 2.34 16 23 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.01 0.37 7.02 -2.39 -0.02 0.35 16 25 H -0.05 -2.99 8.12 -2.39 -0.02 -3.01 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.07 2.67 7.55 -2.39 -0.02 2.65 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.35 6.45 9.08 -89.69 -0.81 5.64 16 30 H 0.34 7.84 7.42 -89.69 -0.67 7.17 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.25 7.51 -2.39 -0.02 1.23 16 33 H 0.06 1.27 8.01 -2.39 -0.02 1.25 16 34 H 0.04 1.38 7.04 -2.38 -0.02 1.36 16 35 H 0.05 1.43 7.43 -2.39 -0.02 1.41 16 36 H 0.07 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -63.49 281.71 0.84 -62.65 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.42 Total: 15.49 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.89 Total: -21.88 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.66 Total: -103.09 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.49 0.84 -62.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405227974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.162 kcal (2) G-P(sol) polarization free energy of solvation -63.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds