Wall clock time and date at job start Mon Mar 30 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99730 * 2 1 4 4 C 1.50699 * 109.47027 * 70.35950 * 3 2 1 5 5 H 1.08001 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99977 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00202 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 119.99928 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47289 * 90.00362 * 8 6 4 10 10 H 1.48504 * 109.47360 * 210.00209 * 8 6 4 11 11 H 1.48503 * 109.47430 * 330.00294 * 8 6 4 12 12 C 1.46900 * 110.99769 * 236.04721 * 2 1 3 13 13 H 1.09002 * 112.90390 * 63.55955 * 12 2 1 14 14 C 1.53775 * 113.61508 * 292.30657 * 12 2 1 15 15 C 1.53787 * 87.08179 * 220.02132 * 14 12 2 16 16 H 1.09000 * 113.60965 * 270.88234 * 15 14 12 17 17 N 1.46897 * 113.61889 * 139.98160 * 15 14 12 18 18 C 1.53782 * 113.61212 * 194.80687 * 12 2 1 19 19 C 1.53000 * 113.61238 * 254.53085 * 18 12 2 20 20 C 1.53001 * 113.61555 * 25.43298 * 18 12 2 21 21 H 1.09002 * 109.47149 * 181.99382 * 1 2 3 22 22 H 1.09005 * 109.47017 * 301.99225 * 1 2 3 23 23 H 1.09001 * 109.47107 * 61.99474 * 1 2 3 24 24 H 1.09005 * 109.46761 * 190.35439 * 3 2 1 25 25 H 1.08998 * 109.47025 * 310.35398 * 3 2 1 26 26 H 0.97004 * 120.00472 * 179.97438 * 7 6 4 27 27 H 1.08997 * 113.61728 * 334.56653 * 14 12 2 28 28 H 1.09000 * 113.61618 * 105.47527 * 14 12 2 29 29 H 1.00902 * 111.00196 * 82.49850 * 17 15 14 30 30 H 1.00893 * 111.00079 * 206.45523 * 17 15 14 31 31 H 1.08994 * 109.47170 * 60.00391 * 19 18 12 32 32 H 1.09003 * 109.46817 * 180.02562 * 19 18 12 33 33 H 1.09005 * 109.47271 * 299.99655 * 19 18 12 34 34 H 1.09003 * 109.46929 * 54.22539 * 20 18 12 35 35 H 1.08996 * 109.46811 * 174.22223 * 20 18 12 36 36 H 1.08989 * 109.47024 * 294.22539 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7295 2.0115 1.3382 5 1 1.2201 1.4553 2.1112 6 6 2.1357 3.3076 1.5753 7 7 1.9033 3.8664 2.7428 8 14 3.0162 4.2698 0.2381 9 1 2.0185 4.9969 -0.5872 10 1 3.9477 5.2443 0.8611 11 1 3.7826 3.3334 -0.6228 12 6 1.9954 -0.7660 -1.1376 13 1 1.7300 -0.3309 -2.1012 14 6 1.7169 -2.2755 -1.0456 15 6 3.1373 -2.4913 -1.5942 16 1 3.1840 -2.5280 -2.6825 17 7 3.8532 -3.6025 -0.9534 18 6 3.4880 -1.1132 -1.0086 19 6 4.3927 -0.2748 -1.9138 20 6 3.9812 -1.1697 0.4386 21 1 -0.3633 -1.0271 0.0358 22 1 -0.3633 0.5445 0.8716 23 1 -0.3633 0.4825 -0.9073 24 1 3.0694 1.3483 -0.1847 25 1 1.5044 1.9491 -0.7831 26 1 2.1894 4.7781 2.9098 27 1 1.5841 -2.6336 -0.0247 28 1 0.9317 -2.6166 -1.7204 29 1 3.5942 -4.4857 -1.3667 30 1 4.8514 -3.4620 -0.9961 31 1 4.2813 0.7798 -1.6625 32 1 5.4304 -0.5755 -1.7692 33 1 4.1110 -0.4320 -2.9551 34 1 3.3551 -1.8556 1.0093 35 1 5.0135 -1.5192 0.4572 36 1 3.9264 -0.1748 0.8802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405227975.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:26 Heat of formation + Delta-G solvation = 21.987756 kcal Electronic energy + Delta-G solvation = -15184.741142 eV Core-core repulsion = 12897.381677 eV Total energy + Delta-G solvation = -2287.359465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.86873 -35.33300 -32.40814 -31.73004 -30.12563 -27.54075 -26.86717 -25.20382 -22.37883 -21.88714 -20.06161 -17.73220 -16.68200 -15.71296 -15.48896 -14.60867 -14.44422 -14.17607 -13.67479 -12.90463 -12.83167 -12.52070 -12.28681 -11.87969 -11.53427 -11.45505 -11.26057 -11.10229 -11.04999 -10.63793 -10.38659 -10.11617 -9.93334 -9.67834 -9.45325 -9.14689 -8.56692 -8.52279 -7.28720 -6.00602 -3.96530 3.29653 3.37478 3.39072 4.45287 4.57398 4.76763 4.90023 5.11646 5.17851 5.24551 5.33269 5.63471 5.73572 5.82989 6.01568 6.04475 6.13901 6.23985 6.30783 6.39860 6.43799 6.56858 6.69599 6.78763 6.89472 6.94147 7.04842 7.24008 7.35438 7.53186 7.70826 8.00564 8.16252 8.73581 9.10061 9.62052 11.12833 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038015 B = 0.009840 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.367450 B = 2844.716509 C = 3125.503284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.511 5.511 3 C 0.160 3.840 4 C -0.503 4.503 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.872 3.128 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.059 3.941 13 H 0.048 0.952 14 C -0.113 4.113 15 C 0.062 3.938 16 H 0.052 0.948 17 N -0.830 5.830 18 C -0.061 4.061 19 C -0.144 4.144 20 C -0.100 4.100 21 H 0.048 0.952 22 H 0.077 0.923 23 H 0.007 0.993 24 H 0.033 0.967 25 H -0.022 1.022 26 H 0.262 0.738 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.333 0.667 30 H 0.338 0.662 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 -11.305 -10.106 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.235 5.235 3 C 0.034 3.966 4 C -0.541 4.541 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.050 4.050 13 H 0.066 0.934 14 C -0.152 4.152 15 C -0.049 4.049 16 H 0.070 0.930 17 N -0.359 5.359 18 C -0.062 4.062 19 C -0.201 4.201 20 C -0.157 4.157 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.026 0.974 24 H 0.051 0.949 25 H -0.004 1.004 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.989 -11.126 -8.904 14.561 hybrid contribution 0.560 0.971 -2.521 2.759 sum 3.548 -10.155 -11.425 15.693 Atomic orbital electron populations 1.22201 0.88646 0.99741 1.00544 1.62140 1.06734 1.16142 1.38439 1.20232 0.95306 0.84114 0.96953 1.21055 1.37568 0.97580 0.97906 0.90150 1.24886 0.95816 0.97444 0.95219 1.69892 1.47750 1.14288 1.22212 0.86920 0.80216 0.80307 0.82640 1.20507 1.21216 1.19173 1.23007 0.95282 0.93730 0.93026 0.93410 1.23006 0.94581 0.95458 1.02109 1.22865 0.96037 0.91322 0.94718 0.93025 1.58778 1.11082 1.03981 1.62088 1.21907 0.94328 0.92732 0.97183 1.21879 0.99026 1.00963 0.98232 1.21215 0.98415 1.03245 0.92858 0.93330 0.90462 0.97399 0.94882 1.00395 0.92778 0.88376 0.92891 0.85546 0.84907 0.91859 0.92980 0.93486 0.91628 0.94593 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.28 60.07 0.56 1.28 16 2 N -0.51 -10.75 3.85 -235.35 -0.91 -11.65 16 3 C 0.16 3.90 3.11 -4.98 -0.02 3.89 16 4 C -0.50 -14.34 9.09 -34.44 -0.31 -14.65 16 5 H 0.08 2.51 7.65 -52.49 -0.40 2.10 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 8 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 12 C 0.06 1.04 2.62 -66.90 -0.18 0.87 16 13 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 14 C -0.11 -1.69 6.46 -25.92 -0.17 -1.86 16 15 C 0.06 0.83 4.40 -66.90 -0.29 0.54 16 16 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16 17 N -0.83 -9.65 8.69 -3.97 -0.03 -9.68 16 18 C -0.06 -0.97 0.74 -153.69 -0.11 -1.08 16 19 C -0.14 -2.17 9.12 37.16 0.34 -1.83 16 20 C -0.10 -1.76 7.54 37.16 0.28 -1.48 16 21 H 0.05 0.82 7.51 -51.93 -0.39 0.43 16 22 H 0.08 1.66 7.12 -51.93 -0.37 1.29 16 23 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 24 H 0.03 0.81 4.03 -51.93 -0.21 0.60 16 25 H -0.02 -0.54 7.50 -51.93 -0.39 -0.93 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.10 1.61 7.61 -51.93 -0.40 1.21 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.33 3.17 9.08 -39.29 -0.36 2.81 16 30 H 0.34 3.58 9.05 -39.30 -0.36 3.23 16 31 H 0.06 1.10 6.74 -51.93 -0.35 0.75 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.63 7.94 -51.93 -0.41 0.22 16 34 H 0.06 1.21 7.28 -51.93 -0.38 0.83 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.49 6.46 -51.94 -0.34 1.15 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -30.05 277.46 -6.69 -36.74 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.03 Total: 2.88 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 0.00 Total: -12.46 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.17 Total: -48.42 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.05 -6.69 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405227975.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.726 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds