Wall clock time and date at job start Mon Mar 30 2020 20:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.09005 * 109.62807 * 59.91459 * 3 2 1 5 5 C 1.54242 * 109.79297 * 299.42645 * 3 2 1 6 6 C 1.45541 * 112.40871 * 160.21175 * 5 3 2 7 7 C 1.54235 * 112.41102 * 61.93448 * 6 5 3 8 8 C 1.50470 * 108.52127 * 280.01558 * 7 6 5 9 9 C 1.54064 * 112.49515 * 94.15091 * 8 7 6 10 10 C 1.50474 * 109.63205 * 180.30164 * 3 2 1 11 11 O 1.42899 * 108.87770 * 93.27617 * 10 3 2 12 12 C 1.50702 * 108.87647 * 334.83429 * 10 3 2 13 13 H 1.08000 * 119.99467 * 351.53982 * 12 10 3 14 14 C 1.37875 * 120.00201 * 171.53626 * 12 10 3 15 15 N 1.31510 * 119.99606 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00020 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46981 * 89.99692 * 16 14 12 18 18 H 1.48501 * 109.47002 * 209.99629 * 16 14 12 19 19 H 1.48502 * 109.47134 * 329.99919 * 16 14 12 20 20 H 1.08996 * 109.47505 * 60.00087 * 1 2 3 21 21 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47021 * 299.99990 * 1 2 3 23 23 H 1.09007 * 109.47246 * 240.00307 * 2 1 3 24 24 H 1.08996 * 109.47505 * 119.99913 * 2 1 3 25 25 H 1.09002 * 108.89625 * 280.96639 * 5 3 2 26 26 H 1.08995 * 108.89610 * 39.45204 * 5 3 2 27 27 H 1.09003 * 108.89442 * 182.68827 * 6 5 3 28 28 H 1.08996 * 108.89611 * 301.27243 * 6 5 3 29 29 H 1.09008 * 109.62730 * 39.72436 * 7 6 5 30 30 H 1.09008 * 109.63086 * 160.30002 * 7 6 5 31 31 H 1.09001 * 108.87937 * 333.36987 * 8 7 6 32 32 H 1.09003 * 108.87417 * 214.92675 * 8 7 6 33 33 H 1.09008 * 108.81098 * 197.42332 * 9 8 7 34 34 H 1.08995 * 108.81457 * 79.14568 * 9 8 7 35 35 H 0.96702 * 114.00346 * 182.97916 * 11 10 3 36 36 H 0.97007 * 119.99904 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6767 1.9593 0.8884 5 6 1.5417 2.1726 -1.2641 6 6 1.5841 3.6204 -1.1215 7 6 3.0163 4.1476 -0.8982 8 6 3.3792 3.9472 0.5482 9 6 4.1349 2.6263 0.7888 10 6 3.5446 1.4468 -0.0075 11 8 4.0001 1.5277 -1.3595 12 6 4.0389 0.1565 0.5942 13 1 3.3424 -0.5211 1.0656 14 6 5.3801 -0.1589 0.5429 15 7 6.2280 0.6660 -0.0316 16 14 5.9925 -1.7586 1.2880 17 1 5.9556 -2.8297 0.2599 18 1 7.3868 -1.5798 1.7667 19 1 5.1219 -2.1382 2.4296 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.1668 1.8826 -2.1086 26 1 0.5150 1.8677 -1.4663 27 1 1.1770 4.0760 -2.0243 28 1 0.9664 3.9096 -0.2714 29 1 3.7122 3.5959 -1.5303 30 1 3.0580 5.2091 -1.1426 31 1 2.4664 3.9448 1.1439 32 1 4.0074 4.7769 0.8724 33 1 4.0957 2.3875 1.8516 34 1 5.1771 2.7597 0.4989 35 1 4.9617 1.4898 -1.4536 36 1 7.1716 0.4439 -0.0681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:40 Heat of formation + Delta-G solvation = -68.005259 kcal Electronic energy + Delta-G solvation = -15802.131447 eV Core-core repulsion = 13478.576841 eV Total energy + Delta-G solvation = -2323.554606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83903 -34.39352 -33.66793 -31.86511 -30.62190 -28.61263 -25.57107 -24.32004 -22.07471 -20.95869 -19.25335 -18.22208 -16.69145 -15.36374 -14.60007 -14.09692 -13.78807 -13.74492 -12.96159 -12.75224 -12.63456 -12.13693 -11.76416 -11.36187 -11.31413 -10.99962 -10.91977 -10.85825 -10.47628 -10.26820 -10.14811 -9.66360 -9.52422 -9.45159 -9.28220 -9.05138 -8.77125 -8.40804 -7.66703 -6.08725 -4.15461 3.26656 3.34036 3.36716 4.38240 5.16939 5.53718 5.58112 5.72299 5.88915 5.92629 6.04706 6.20006 6.27733 6.34521 6.38526 6.49035 6.55399 6.62890 6.67063 6.80952 6.89927 6.91558 6.97633 7.10135 7.21305 7.27483 7.38503 7.42426 7.44160 7.76415 7.89896 8.10409 8.34966 8.86769 9.52655 9.83237 10.96007 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.013736 C = 0.010669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.526162 B = 2037.906547 C = 2623.766726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.057 4.057 4 H 0.051 0.949 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.126 4.126 10 C 0.258 3.742 11 O -0.587 6.587 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.049 0.951 21 H 0.040 0.960 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.378 0.622 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 2.907 -0.394 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C -0.075 4.075 4 H 0.070 0.930 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.164 4.164 10 C 0.219 3.781 11 O -0.399 6.399 12 C -0.576 4.576 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.545 5.545 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.231 0.769 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.532 2.962 -0.542 7.193 hybrid contribution 1.097 -0.844 0.701 1.552 sum -5.435 2.118 0.159 5.835 Atomic orbital electron populations 1.21987 0.98616 0.99997 1.00770 1.21690 0.92117 0.97776 1.02947 1.20779 0.96240 0.94448 0.96060 0.93037 1.20412 0.99517 0.94483 1.00997 1.20354 0.96809 0.97180 0.99518 1.21439 0.97604 0.98591 0.98272 1.21393 0.99242 0.98527 0.96115 1.22531 1.00730 0.93352 0.99801 1.18194 0.88664 0.91159 0.80129 1.86097 1.29115 1.96204 1.28512 1.22324 0.93025 1.05515 1.36692 0.90972 1.25013 0.96799 0.96703 0.94774 1.69427 1.03415 1.36264 1.45403 0.86581 0.77951 0.83894 0.79451 1.20683 1.21330 1.19983 0.93171 0.94053 0.93807 0.92005 0.90838 0.89938 0.94103 0.94086 0.94008 0.89066 0.94412 0.93992 0.94599 0.93982 0.90966 0.76852 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.64 37.16 0.36 -2.20 16 2 C -0.11 -2.17 4.38 -26.73 -0.12 -2.29 16 3 C -0.06 -1.19 1.75 -91.23 -0.16 -1.35 16 4 H 0.05 1.08 6.98 -51.93 -0.36 0.71 16 5 C -0.12 -2.25 4.55 -29.60 -0.13 -2.39 16 6 C -0.10 -1.79 5.26 -29.60 -0.16 -1.95 16 7 C -0.12 -2.29 5.61 -27.35 -0.15 -2.44 16 8 C -0.12 -2.27 5.31 -27.44 -0.15 -2.41 16 9 C -0.13 -2.91 4.56 -25.62 -0.12 -3.03 16 10 C 0.26 6.15 0.54 -92.48 -0.05 6.10 16 11 O -0.59 -14.63 8.35 -35.23 -0.29 -14.92 16 12 C -0.54 -13.99 7.19 -34.44 -0.25 -14.24 16 13 H 0.07 1.86 4.87 -52.49 -0.26 1.60 16 14 C 0.07 1.77 5.22 -17.82 -0.09 1.68 16 15 N -0.90 -24.08 9.79 55.43 0.54 -23.54 16 16 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 H 0.05 0.78 6.09 -51.93 -0.32 0.47 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.34 8.12 -51.93 -0.42 0.91 16 24 H 0.07 1.55 5.61 -51.93 -0.29 1.26 16 25 H 0.08 1.77 6.22 -51.93 -0.32 1.44 16 26 H 0.04 0.72 5.69 -51.93 -0.30 0.42 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.71 7.46 -51.93 -0.39 0.32 16 29 H 0.09 1.92 5.71 -51.92 -0.30 1.62 16 30 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.04 0.79 6.63 -51.93 -0.34 0.44 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 1.00 7.97 -51.92 -0.41 0.59 16 34 H 0.07 1.82 6.87 -51.93 -0.36 1.47 16 35 H 0.38 9.99 6.42 45.56 0.29 10.28 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 256.67 15.07 3.87 3.87 Total: -1.00 -25.70 256.67 -6.94 -32.64 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.02 Total: 10.71 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -1.02 Total: -24.53 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.54 Total: -23.54 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.29 Total: -14.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.70 -6.94 -32.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.363 kcal (2) G-P(sol) polarization free energy of solvation -25.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds