Wall clock time and date at job start Mon Mar 30 2020 20:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00375 * 2 1 4 4 H 1.07997 * 120.00400 * 154.72701 * 3 2 1 5 5 C 1.38818 * 119.99726 * 334.72730 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.25889 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.25622 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46507 * 119.99909 * 179.97438 * 2 1 3 12 12 H 1.08990 * 110.64358 * 180.70003 * 11 2 1 13 13 C 1.54937 * 110.72349 * 303.86010 * 11 2 1 14 14 N 1.48733 * 103.13434 * 155.62322 * 13 11 2 15 15 C 1.46900 * 111.03933 * 200.42405 * 14 13 11 16 16 C 1.47898 * 105.94015 * 321.03278 * 14 13 11 17 17 C 1.52999 * 109.92045 * 265.84960 * 16 14 13 18 18 C 1.53002 * 110.07855 * 144.64929 * 16 14 13 19 19 C 1.53999 * 107.06075 * 25.20618 * 16 14 13 20 20 H 1.09001 * 109.46997 * 84.50395 * 1 2 3 21 21 H 1.09006 * 109.47195 * 324.51066 * 1 2 3 22 22 H 1.09004 * 109.47397 * 204.51105 * 1 2 3 23 23 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 24 24 H 1.09004 * 110.66357 * 274.20423 * 13 11 2 25 25 H 1.08991 * 110.67007 * 37.33125 * 13 11 2 26 26 H 1.09004 * 109.46711 * 177.57799 * 15 14 13 27 27 H 1.09001 * 109.47081 * 297.57010 * 15 14 13 28 28 H 1.08992 * 109.47737 * 57.57576 * 15 14 13 29 29 H 1.09001 * 109.47355 * 177.59031 * 17 16 14 30 30 H 1.09000 * 109.47065 * 297.59678 * 17 16 14 31 31 H 1.09006 * 109.47002 * 57.59334 * 17 16 14 32 32 H 1.09004 * 109.47219 * 302.30623 * 18 16 14 33 33 H 1.08995 * 109.47159 * 62.31165 * 18 16 14 34 34 H 1.09008 * 109.47045 * 182.31076 * 18 16 14 35 35 H 1.08996 * 110.30794 * 239.85653 * 19 16 14 36 36 H 1.08995 * 110.39416 * 117.72855 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1522 1.2306 0.3993 5 6 1.5553 2.3305 -0.5133 6 7 0.3049 2.2957 -0.9227 7 14 2.5302 3.9202 -0.6228 8 1 3.7183 3.7136 -1.4893 9 1 1.6742 4.9868 -1.2016 10 1 2.9726 4.3242 0.7360 11 6 2.1975 -1.2688 0.0006 12 1 3.2728 -1.0917 0.0129 13 6 1.7724 -2.1468 1.2043 14 7 2.0919 -3.5254 0.7467 15 6 1.3393 -4.5245 1.5170 16 6 1.7247 -3.5734 -0.6852 17 6 0.3019 -4.1141 -0.8406 18 6 2.7066 -4.4635 -1.4497 19 6 1.7990 -2.1309 -1.2193 20 1 -0.3633 0.0984 -1.0230 21 1 -0.3634 0.8368 0.5966 22 1 -0.3634 -0.9351 0.4264 23 1 -0.1103 3.0954 -1.2816 24 1 2.3506 -1.8890 2.0917 25 1 0.7044 -2.0447 1.3968 26 1 1.5596 -5.5206 1.1329 27 1 1.6286 -4.4676 2.5663 28 1 0.2716 -4.3269 1.4232 29 1 0.0232 -4.1062 -1.8943 30 1 0.2575 -5.1347 -0.4605 31 1 -0.3889 -3.4864 -0.2775 32 1 3.7197 -4.0834 -1.3183 33 1 2.6481 -5.4821 -1.0661 34 1 2.4515 -4.4591 -2.5095 35 1 0.8274 -1.8187 -1.6021 36 1 2.5553 -2.0536 -2.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694096601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:01 Heat of formation + Delta-G solvation = 32.499883 kcal Electronic energy + Delta-G solvation = -15247.931459 eV Core-core repulsion = 12961.027834 eV Total energy + Delta-G solvation = -2286.903625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38047 -35.26723 -31.95586 -31.79089 -29.20818 -27.07231 -25.97816 -25.18225 -24.34225 -22.39071 -19.17700 -18.35481 -16.85926 -15.36893 -15.27457 -14.41787 -14.13367 -13.63703 -13.30299 -12.97301 -12.62979 -12.30877 -12.21919 -12.05414 -11.50641 -11.41434 -11.15177 -10.79599 -10.72033 -10.71858 -10.38519 -10.30176 -10.22264 -10.11697 -9.78200 -9.60417 -8.46678 -7.98573 -6.68950 -5.70221 -3.16382 3.40991 3.45847 3.46904 4.31706 4.55949 5.07390 5.22833 5.36165 5.49353 5.53182 5.68308 5.74687 5.78227 5.87626 5.93613 5.97187 6.04368 6.06680 6.19475 6.26009 6.33751 6.43439 6.57841 6.68423 6.82721 6.94481 7.00402 7.39009 7.48867 7.53878 7.80410 7.87817 8.46110 9.29631 9.91220 10.41349 11.34499 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051110 B = 0.008223 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.709551 B = 3404.452040 C = 3428.280268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.595 5.595 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.911 5.911 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.181 3.819 12 H 0.073 0.927 13 C 0.017 3.983 14 N -0.514 5.514 15 C 0.017 3.983 16 C 0.086 3.914 17 C -0.164 4.164 18 C -0.124 4.124 19 C -0.139 4.139 20 H 0.023 0.977 21 H 0.052 0.948 22 H -0.010 1.010 23 H 0.252 0.748 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 -11.758 1.153 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.316 5.316 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.556 5.556 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.071 3.929 12 H 0.091 0.909 13 C -0.113 4.113 14 N -0.238 5.238 15 C -0.132 4.132 16 C -0.004 4.004 17 C -0.222 4.222 18 C -0.182 4.182 19 C -0.179 4.179 20 H 0.042 0.958 21 H 0.071 0.929 22 H 0.009 0.991 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.452 -11.702 1.168 11.849 hybrid contribution -0.531 1.008 -0.205 1.158 sum 0.920 -10.694 0.963 10.776 Atomic orbital electron populations 1.20819 0.82615 0.95099 0.99128 1.43902 1.01840 1.00174 1.85704 1.19209 0.99118 0.86340 1.33705 0.91350 1.25153 0.96561 0.98760 0.98878 1.70079 1.11126 1.28004 1.46427 0.86328 0.79309 0.83013 0.77864 1.20957 1.21652 1.21042 1.21163 0.96059 0.85407 0.90296 0.90879 1.23822 0.99413 0.87806 1.00213 1.64751 1.52952 1.04159 1.01978 1.22489 0.96244 0.96156 0.98321 1.21780 0.93013 0.96471 0.89133 1.22403 0.97476 1.00460 1.01901 1.21715 0.99501 0.98467 0.98468 1.23090 1.02293 0.92390 1.00131 0.95818 0.92945 0.99125 0.93735 0.90894 0.93614 0.92113 0.92134 0.95238 0.92434 0.92785 0.92649 0.92079 0.93521 0.92887 0.91138 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.22 7.67 59.85 0.46 4.68 16 2 N -0.59 -15.16 2.94 -171.35 -0.50 -15.67 16 3 C -0.25 -7.07 9.61 -15.06 -0.14 -7.22 16 4 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 5 C 0.00 0.12 5.38 -17.43 -0.09 0.02 16 6 N -0.91 -26.68 10.12 55.49 0.56 -26.12 16 7 Si 0.91 22.03 29.56 -169.99 -5.02 17.00 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 C 0.18 3.86 3.54 -66.06 -0.23 3.62 16 12 H 0.07 1.60 7.94 -51.93 -0.41 1.19 16 13 C 0.02 0.32 6.10 -1.79 -0.01 0.31 16 14 N -0.51 -8.40 5.18 -222.99 -1.15 -9.56 16 15 C 0.02 0.23 8.32 60.06 0.50 0.73 16 16 C 0.09 1.36 0.89 -130.53 -0.12 1.24 16 17 C -0.16 -2.35 6.97 37.16 0.26 -2.09 16 18 C -0.12 -1.70 8.63 37.16 0.32 -1.38 16 19 C -0.14 -2.64 5.82 -25.37 -0.15 -2.79 16 20 H 0.02 0.64 7.39 -51.93 -0.38 0.26 16 21 H 0.05 1.44 7.02 -51.93 -0.36 1.07 16 22 H -0.01 -0.22 6.19 -51.93 -0.32 -0.54 16 23 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.05 0.90 6.01 -51.93 -0.31 0.59 16 26 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.40 6.28 -51.93 -0.33 0.08 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.68 6.69 -51.93 -0.35 0.33 16 31 H 0.05 0.86 7.59 -51.93 -0.39 0.47 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 1.46 6.61 -51.93 -0.34 1.12 16 36 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 LS Contribution 274.20 15.07 4.13 4.13 Total: -1.00 -28.88 274.20 -7.29 -36.17 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.09 Total: -3.09 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.79 Total: -2.87 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -1.10 Total: -51.34 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.88 -7.29 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694096601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.666 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds