Wall clock time and date at job start Mon Mar 30 2020 20:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48538 * 110.99675 * 2 1 4 4 C 1.54940 * 103.22328 * 200.27949 * 3 2 1 5 5 H 1.09001 * 110.87639 * 278.97768 * 4 3 2 6 6 N 1.46905 * 110.72176 * 155.77360 * 4 3 2 7 7 C 1.46905 * 111.00163 * 91.49455 * 6 4 3 8 8 C 1.50696 * 109.46934 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47364 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.46883 * 120.00040 * 12 10 8 15 15 H 1.48497 * 109.46870 * 239.99850 * 12 10 8 16 16 C 1.54588 * 102.92197 * 37.41693 * 4 3 2 17 17 C 1.47901 * 111.00095 * 242.60434 * 2 1 3 18 18 C 1.53002 * 109.91600 * 26.49091 * 17 2 1 19 19 C 1.52998 * 110.07968 * 265.28648 * 17 2 1 20 20 H 1.09000 * 109.46956 * 177.40219 * 1 2 3 21 21 H 1.09005 * 109.46850 * 297.39221 * 1 2 3 22 22 H 1.09000 * 109.47306 * 57.39377 * 1 2 3 23 23 H 1.08996 * 110.66759 * 81.84822 * 3 2 1 24 24 H 1.08997 * 110.66945 * 318.71248 * 3 2 1 25 25 H 1.00904 * 110.99696 * 327.54303 * 6 4 3 26 26 H 1.09000 * 109.46374 * 60.00274 * 7 6 4 27 27 H 1.08999 * 109.46732 * 300.00347 * 7 6 4 28 28 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 29 29 H 1.09000 * 110.31387 * 96.95896 * 16 4 3 30 30 H 1.09001 * 110.30772 * 219.02844 * 16 4 3 31 31 H 1.08998 * 109.47124 * 177.59350 * 18 17 2 32 32 H 1.09005 * 109.46784 * 297.58688 * 18 17 2 33 33 H 1.08993 * 109.47222 * 57.58818 * 18 17 2 34 34 H 1.08996 * 109.47042 * 302.31129 * 19 17 2 35 35 H 1.09000 * 109.47090 * 62.31007 * 19 17 2 36 36 H 1.08999 * 109.46653 * 182.31019 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 1 4.1140 0.8849 0.2772 6 7 3.9385 2.4568 -1.1277 7 6 4.6332 3.2868 -0.1345 8 6 5.1203 4.5530 -0.7905 9 1 4.9329 4.7239 -1.8403 10 6 5.8061 5.4930 -0.0506 11 7 6.0398 5.2818 1.2263 12 14 6.4105 7.0622 -0.8639 13 1 6.0287 7.0548 -2.2990 14 1 5.7952 8.2359 -0.1935 15 1 7.8885 7.1433 -0.7458 16 6 3.2982 0.1055 -1.5931 17 6 1.9991 -0.6353 -1.2259 18 6 0.9839 -0.5018 -2.3628 19 6 2.2975 -2.1130 -0.9648 20 1 -0.3633 -1.0266 -0.0466 21 1 -0.3633 0.4728 0.9125 22 1 -0.3634 0.5538 -0.8657 23 1 2.0041 1.7977 1.0095 24 1 1.4237 2.0205 -0.6729 25 1 3.1849 2.9678 -1.5625 26 1 5.4834 2.7363 0.2681 27 1 3.9464 3.5369 0.6741 28 1 5.7262 4.4668 1.6486 29 1 3.2136 0.5486 -2.5853 30 1 4.1478 -0.5764 -1.5552 31 1 1.3990 -0.9342 -3.2732 32 1 0.0677 -1.0285 -2.0955 33 1 0.7617 0.5521 -2.5296 34 1 3.0061 -2.2005 -0.1412 35 1 1.3736 -2.6301 -0.7057 36 1 2.7255 -2.5611 -1.8615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694170064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:04 Heat of formation + Delta-G solvation = -3.458730 kcal Electronic energy + Delta-G solvation = -14668.447309 eV Core-core repulsion = 12379.984402 eV Total energy + Delta-G solvation = -2288.462907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75346 -35.34984 -32.79893 -32.27296 -29.89120 -27.39035 -25.82882 -25.43617 -23.85121 -21.98077 -20.41805 -18.70674 -16.97803 -15.69537 -15.41860 -14.68794 -14.28374 -13.73581 -13.58456 -13.28624 -13.23571 -12.81324 -12.54488 -12.10507 -11.85199 -11.70774 -11.51683 -11.21213 -11.03165 -10.92419 -10.74787 -10.64639 -10.45523 -10.18628 -10.08675 -8.62779 -8.41683 -8.33921 -7.40856 -6.37831 -4.06909 3.44576 3.48907 3.62751 4.01801 4.53196 4.70081 4.89475 4.98135 5.21902 5.27579 5.38974 5.40242 5.45041 5.54588 5.60443 5.63785 5.70571 5.81329 5.81812 5.95437 6.03362 6.05964 6.15565 6.33962 6.40507 6.50473 6.91826 7.05683 7.14477 7.17871 7.78575 8.14147 8.44331 8.57932 8.87087 9.65058 11.02194 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.058270 B = 0.006148 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.409399 B = 4553.287748 C = 4623.493518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.511 5.511 3 C 0.009 3.991 4 C 0.086 3.914 5 H 0.082 0.918 6 N -0.673 5.673 7 C 0.183 3.817 8 C -0.596 4.596 9 H 0.056 0.944 10 C 0.014 3.986 11 N -0.915 5.915 12 Si 1.079 2.921 13 H -0.289 1.289 14 H -0.288 1.288 15 H -0.287 1.287 16 C -0.112 4.112 17 C 0.083 3.917 18 C -0.166 4.166 19 C -0.126 4.126 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.331 0.669 26 H 0.019 0.981 27 H -0.023 1.023 28 H 0.268 0.732 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -11.581 -4.733 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.235 5.235 3 C -0.121 4.121 4 C -0.026 4.026 5 H 0.100 0.900 6 N -0.302 5.302 7 C 0.056 3.944 8 C -0.635 4.635 9 H 0.074 0.926 10 C -0.190 4.190 11 N -0.551 5.551 12 Si 0.907 3.093 13 H -0.215 1.215 14 H -0.214 1.214 15 H -0.213 1.213 16 C -0.150 4.150 17 C -0.006 4.006 18 C -0.224 4.224 19 C -0.184 4.184 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.148 0.852 26 H 0.037 0.963 27 H -0.005 1.005 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.609 -10.729 -4.221 14.389 hybrid contribution -1.992 -0.671 -0.388 2.138 sum -10.602 -11.399 -4.609 16.235 Atomic orbital electron populations 1.22534 0.88797 1.01405 1.00708 1.64773 1.07522 1.15171 1.36020 1.24006 0.97289 0.89310 1.01448 1.22472 0.92638 0.92222 0.95313 0.89995 1.60642 1.30435 1.06079 1.33036 1.19700 0.92580 0.92317 0.89753 1.22064 1.39835 1.03584 0.98020 0.92559 1.25873 0.94721 1.02779 0.95583 1.70728 1.44692 1.28568 1.11104 0.83408 0.76529 0.74742 0.74598 1.21476 1.21429 1.21297 1.22550 0.95601 0.97032 0.99857 1.21856 0.94720 0.95504 0.88568 1.22420 0.99421 1.01688 0.98921 1.21727 1.01356 0.93828 1.01444 0.91705 0.91832 0.95008 0.90406 0.93847 0.85185 0.96329 1.00514 0.92188 0.90767 0.91137 0.92092 0.92401 0.92665 0.91932 0.93182 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.32 60.06 0.50 0.67 16 2 N -0.51 -7.35 5.18 -223.15 -1.16 -8.50 16 3 C 0.01 0.15 6.12 -1.89 -0.01 0.14 16 4 C 0.09 1.56 3.39 -65.85 -0.22 1.33 16 5 H 0.08 1.61 7.82 -51.93 -0.41 1.21 16 6 N -0.67 -14.64 6.31 -106.02 -0.67 -15.31 16 7 C 0.18 4.83 4.62 -4.97 -0.02 4.81 16 8 C -0.60 -17.27 9.32 -34.44 -0.32 -17.59 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 11 N -0.91 -28.28 13.65 55.43 0.76 -27.53 16 12 Si 1.08 25.68 29.90 -169.99 -5.08 20.60 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.11 -1.70 5.95 -25.38 -0.15 -1.85 16 17 C 0.08 1.09 0.89 -130.53 -0.12 0.98 16 18 C -0.17 -1.90 6.97 37.16 0.26 -1.65 16 19 C -0.13 -1.45 8.64 37.16 0.32 -1.13 16 20 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.03 0.37 6.27 -51.93 -0.33 0.04 16 23 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.04 0.71 7.60 -51.93 -0.39 0.31 16 25 H 0.33 6.96 8.20 -39.29 -0.32 6.64 16 26 H 0.02 0.53 7.94 -51.93 -0.41 0.11 16 27 H -0.02 -0.62 8.01 -51.93 -0.42 -1.04 16 28 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 29 H 0.07 1.15 7.59 -51.93 -0.39 0.76 16 30 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.59 6.69 -51.93 -0.35 0.25 16 33 H 0.05 0.68 7.59 -51.93 -0.39 0.28 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -30.40 283.08 -8.00 -38.40 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.25 Total: 2.05 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 0.14 Total: -13.97 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -1.07 Total: -51.34 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.40 -8.00 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694170064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.938 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds