Wall clock time and date at job start Mon Mar 30 2020 20:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48534 * 111.00086 * 2 1 4 4 C 1.54941 * 103.22715 * 159.72265 * 3 2 1 5 5 H 1.09002 * 110.72497 * 80.94292 * 4 3 2 6 6 N 1.46902 * 110.72238 * 204.05120 * 4 3 2 7 7 C 1.46899 * 110.99796 * 271.14577 * 6 4 3 8 8 C 1.50694 * 109.47331 * 180.02562 * 7 6 4 9 9 H 1.08004 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00449 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99800 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00221 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47348 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46979 * 120.00126 * 12 10 8 15 15 H 1.48499 * 109.47419 * 240.00145 * 12 10 8 16 16 C 1.54594 * 102.92103 * 322.58310 * 4 3 2 17 17 C 1.47898 * 111.00253 * 117.39613 * 2 1 3 18 18 C 1.53002 * 109.91610 * 333.51120 * 17 2 1 19 19 C 1.53003 * 109.92071 * 94.80295 * 17 2 1 20 20 H 1.09000 * 109.46994 * 59.87789 * 1 2 3 21 21 H 1.09004 * 109.47377 * 179.87617 * 1 2 3 22 22 H 1.09004 * 109.47068 * 299.87486 * 1 2 3 23 23 H 1.08991 * 110.66978 * 41.28735 * 3 2 1 24 24 H 1.09006 * 110.80663 * 278.21988 * 3 2 1 25 25 H 1.00900 * 111.00193 * 147.19430 * 6 4 3 26 26 H 1.09003 * 109.47301 * 300.00271 * 7 6 4 27 27 H 1.09005 * 109.47371 * 59.99937 * 7 6 4 28 28 H 0.96997 * 120.00151 * 179.97438 * 11 10 8 29 29 H 1.09000 * 110.31188 * 140.87313 * 16 4 3 30 30 H 1.08995 * 110.31105 * 263.04271 * 16 4 3 31 31 H 1.08999 * 109.47593 * 61.45179 * 18 17 2 32 32 H 1.09003 * 109.47205 * 181.45940 * 18 17 2 33 33 H 1.09004 * 109.47004 * 301.44865 * 18 17 2 34 34 H 1.08994 * 109.46813 * 58.54634 * 19 17 2 35 35 H 1.08992 * 109.47318 * 178.55117 * 19 17 2 36 36 H 1.09004 * 109.46732 * 298.55116 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 0.5227 5 1 4.1115 0.8835 -0.2788 6 7 3.9401 2.4579 1.1239 7 6 4.5801 3.3123 0.1148 8 6 5.0705 4.5791 0.7671 9 1 4.9212 4.7343 1.8255 10 6 5.7098 5.5402 0.0130 11 7 5.8911 5.3515 -1.2758 12 14 6.3170 7.1108 0.8215 13 1 5.9916 7.0796 2.2702 14 1 7.7876 7.2206 0.6472 15 1 5.6549 8.2805 0.1902 16 6 3.2983 0.1054 1.5931 17 6 1.9990 -0.6353 1.2259 18 6 0.9839 -0.5019 2.3628 19 6 2.2983 -2.1121 0.9601 20 1 -0.3633 0.5157 -0.8889 21 1 -0.3634 -1.0277 -0.0022 22 1 -0.3633 0.5119 0.8911 23 1 1.4238 2.0204 0.6729 24 1 2.0040 1.8004 -1.0085 25 1 4.5702 2.2673 1.8885 26 1 5.4233 2.7822 -0.3282 27 1 3.8576 3.5598 -0.6629 28 1 6.3405 6.0278 -1.8065 29 1 4.1469 -0.5775 1.5540 30 1 3.2136 0.5486 2.5852 31 1 0.0616 -1.0140 2.0885 32 1 1.3923 -0.9493 3.2690 33 1 0.7746 0.5529 2.5411 34 1 3.0185 -2.1960 0.1463 35 1 2.7123 -2.5666 1.8600 36 1 1.3771 -2.6255 0.6845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694170065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:06 Heat of formation + Delta-G solvation = 0.951303 kcal Electronic energy + Delta-G solvation = -14629.126905 eV Core-core repulsion = 12340.855231 eV Total energy + Delta-G solvation = -2288.271674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61792 -35.12625 -32.57236 -32.18409 -29.96304 -27.36734 -26.21526 -25.39456 -23.90611 -21.71384 -20.04493 -18.60362 -16.46049 -15.63105 -15.27509 -14.59497 -14.51607 -14.04507 -13.74374 -13.05744 -12.99014 -12.62671 -12.30102 -12.20940 -11.69194 -11.58016 -11.42929 -11.22588 -11.01698 -10.82492 -10.71961 -10.55491 -10.46983 -10.17960 -9.78559 -9.12682 -8.48124 -8.18269 -7.31368 -6.02340 -4.04375 3.31376 3.38538 3.43557 4.14124 4.44492 4.78655 4.91996 5.08684 5.26154 5.33626 5.37426 5.53314 5.56527 5.62483 5.67245 5.75520 5.85345 5.91184 5.93087 6.06464 6.11897 6.16849 6.29790 6.42321 6.49163 6.54973 7.10801 7.29053 7.33751 7.44064 7.80495 8.14620 8.40529 8.62392 9.05332 9.60586 11.08819 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057995 B = 0.006142 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.686756 B = 4557.846484 C = 4642.287869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.516 5.516 3 C 0.049 3.951 4 C 0.084 3.916 5 H 0.049 0.951 6 N -0.683 5.683 7 C 0.194 3.806 8 C -0.514 4.514 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.124 4.124 17 C 0.088 3.912 18 C -0.166 4.166 19 C -0.126 4.126 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.033 0.967 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.330 0.670 26 H -0.013 1.013 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -12.223 4.821 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.240 5.240 3 C -0.079 4.079 4 C -0.028 4.028 5 H 0.067 0.933 6 N -0.314 5.314 7 C 0.067 3.933 8 C -0.553 4.553 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.726 3.274 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.163 4.163 17 C -0.001 4.001 18 C -0.225 4.225 19 C -0.184 4.184 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.148 0.852 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.697 -12.096 4.137 15.462 hybrid contribution 0.856 0.912 0.795 1.482 sum -7.841 -11.184 4.932 14.522 Atomic orbital electron populations 1.22524 0.88772 1.01298 1.00797 1.64798 1.07562 1.16031 1.35629 1.23186 0.95349 0.88184 1.01143 1.22306 0.95365 0.89862 0.95249 0.93332 1.60702 1.44333 1.13533 1.12831 1.19599 0.92259 0.91085 0.90321 1.21231 1.36263 1.02193 0.95581 0.91964 1.24996 0.96107 0.98668 0.94842 1.69975 1.43059 1.34986 1.05669 0.86434 0.78277 0.83085 0.79560 1.19687 1.21093 1.20997 1.22716 0.96402 0.97338 0.99827 1.21735 0.94345 0.95187 0.88881 1.22418 0.99391 1.01997 0.98673 1.21737 1.01422 0.94018 1.01236 0.91773 0.91915 0.94837 0.92863 0.90476 0.85246 0.99529 0.95368 0.92964 0.91482 0.90668 0.92375 0.92332 0.92277 0.92011 0.92760 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.33 60.06 0.50 0.69 16 2 N -0.52 -7.69 5.17 -223.16 -1.15 -8.84 16 3 C 0.05 0.87 6.21 -1.90 -0.01 0.86 16 4 C 0.08 1.54 3.36 -65.85 -0.22 1.32 16 5 H 0.05 0.98 7.86 -51.93 -0.41 0.57 16 6 N -0.68 -14.79 6.32 -106.02 -0.67 -15.46 16 7 C 0.19 5.15 5.31 -4.98 -0.03 5.12 16 8 C -0.51 -14.70 9.32 -34.44 -0.32 -15.02 16 9 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 12 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 C -0.12 -1.85 5.71 -25.37 -0.14 -2.00 16 17 C 0.09 1.18 0.89 -130.53 -0.12 1.06 16 18 C -0.17 -1.95 6.97 37.16 0.26 -1.70 16 19 C -0.13 -1.47 8.63 37.16 0.32 -1.14 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 22 H 0.03 0.41 6.14 -51.93 -0.32 0.09 16 23 H 0.05 0.97 8.00 -51.93 -0.42 0.55 16 24 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 25 H 0.33 6.81 8.40 -39.29 -0.33 6.48 16 26 H -0.01 -0.37 8.08 -51.93 -0.42 -0.79 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 30 H 0.07 1.11 7.52 -51.93 -0.39 0.72 16 31 H 0.06 0.61 6.66 -51.93 -0.35 0.27 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.76 7.63 -51.93 -0.40 0.37 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -29.80 284.80 -8.01 -37.82 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.34 Total: 1.06 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.14 Total: -9.31 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -1.09 Total: -50.67 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.80 -8.01 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694170065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds