Wall clock time and date at job start Mon Mar 30 2020 20:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48534 * 111.00086 * 2 1 4 4 C 1.54941 * 103.22715 * 159.72265 * 3 2 1 5 5 H 1.09002 * 110.72497 * 80.94292 * 4 3 2 6 6 N 1.46902 * 110.72238 * 204.05120 * 4 3 2 7 7 C 1.46899 * 110.99796 * 271.14577 * 6 4 3 8 8 C 1.50694 * 109.47331 * 180.02562 * 7 6 4 9 9 H 1.08004 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00449 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99800 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00221 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47348 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46979 * 120.00126 * 12 10 8 15 15 H 1.48499 * 109.47419 * 240.00145 * 12 10 8 16 16 C 1.54594 * 102.92103 * 322.58310 * 4 3 2 17 17 C 1.47898 * 111.00253 * 117.39613 * 2 1 3 18 18 C 1.53002 * 109.91610 * 333.51120 * 17 2 1 19 19 C 1.53003 * 109.92071 * 94.80295 * 17 2 1 20 20 H 1.09000 * 109.46994 * 59.87789 * 1 2 3 21 21 H 1.09004 * 109.47377 * 179.87617 * 1 2 3 22 22 H 1.09004 * 109.47068 * 299.87486 * 1 2 3 23 23 H 1.08991 * 110.66978 * 41.28735 * 3 2 1 24 24 H 1.09006 * 110.80663 * 278.21988 * 3 2 1 25 25 H 1.00900 * 111.00193 * 147.19430 * 6 4 3 26 26 H 1.09003 * 109.47301 * 300.00271 * 7 6 4 27 27 H 1.09005 * 109.47371 * 59.99937 * 7 6 4 28 28 H 0.96997 * 120.00151 * 179.97438 * 11 10 8 29 29 H 1.09000 * 110.31188 * 140.87313 * 16 4 3 30 30 H 1.08995 * 110.31105 * 263.04271 * 16 4 3 31 31 H 1.08999 * 109.47593 * 61.45179 * 18 17 2 32 32 H 1.09003 * 109.47205 * 181.45940 * 18 17 2 33 33 H 1.09004 * 109.47004 * 301.44865 * 18 17 2 34 34 H 1.08994 * 109.46813 * 58.54634 * 19 17 2 35 35 H 1.08992 * 109.47318 * 178.55117 * 19 17 2 36 36 H 1.09004 * 109.46732 * 298.55116 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 0.5227 5 1 4.1115 0.8835 -0.2788 6 7 3.9401 2.4579 1.1239 7 6 4.5801 3.3123 0.1148 8 6 5.0705 4.5791 0.7671 9 1 4.9212 4.7343 1.8255 10 6 5.7098 5.5402 0.0130 11 7 5.8911 5.3515 -1.2758 12 14 6.3170 7.1108 0.8215 13 1 5.9916 7.0796 2.2702 14 1 7.7876 7.2206 0.6472 15 1 5.6549 8.2805 0.1902 16 6 3.2983 0.1054 1.5931 17 6 1.9990 -0.6353 1.2259 18 6 0.9839 -0.5019 2.3628 19 6 2.2983 -2.1121 0.9601 20 1 -0.3633 0.5157 -0.8889 21 1 -0.3634 -1.0277 -0.0022 22 1 -0.3633 0.5119 0.8911 23 1 1.4238 2.0204 0.6729 24 1 2.0040 1.8004 -1.0085 25 1 4.5702 2.2673 1.8885 26 1 5.4233 2.7822 -0.3282 27 1 3.8576 3.5598 -0.6629 28 1 6.3405 6.0278 -1.8065 29 1 4.1469 -0.5775 1.5540 30 1 3.2136 0.5486 2.5852 31 1 0.0616 -1.0140 2.0885 32 1 1.3923 -0.9493 3.2690 33 1 0.7746 0.5529 2.5411 34 1 3.0185 -2.1960 0.1463 35 1 2.7123 -2.5666 1.8600 36 1 1.3771 -2.6255 0.6845 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694170065.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:06 Heat of formation + Delta-G solvation = -20.707364 kcal Electronic energy + Delta-G solvation = -14630.066095 eV Core-core repulsion = 12340.855231 eV Total energy + Delta-G solvation = -2289.210864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83905 -36.88468 -34.63281 -33.28529 -31.58785 -28.48257 -27.94350 -26.65985 -25.20227 -23.73825 -21.55960 -19.72340 -18.58209 -17.05086 -16.67562 -16.53187 -15.71875 -15.51046 -15.08822 -14.50181 -14.32862 -14.12652 -13.82518 -13.48568 -13.37530 -12.85548 -12.72861 -12.56933 -12.51285 -12.27699 -12.21004 -12.02676 -11.83718 -11.70202 -11.45856 -11.15450 -10.68520 -9.35952 -9.18433 -8.23837 -6.35648 1.40725 1.41565 1.55596 2.39082 2.94438 3.09504 3.60340 3.66128 3.75344 4.03260 4.21042 4.39442 4.46304 4.49246 4.58288 4.69413 4.78647 4.83697 4.91874 4.95126 4.98862 5.01868 5.05087 5.10123 5.18426 5.23395 5.28739 5.49090 5.60910 5.93473 6.02187 6.18255 6.43360 6.70515 6.87523 7.35661 8.88257 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057995 B = 0.006142 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.686756 B = 4557.846484 C = 4642.287869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.057 3.943 4 C 0.077 3.923 5 H 0.027 0.973 6 N -0.677 5.677 7 C 0.211 3.789 8 C -0.536 4.536 9 H 0.066 0.934 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.976 3.024 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.116 4.116 17 C 0.086 3.914 18 C -0.161 4.161 19 C -0.122 4.122 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.338 0.662 26 H -0.042 1.042 27 H -0.002 1.002 28 H 0.265 0.735 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.906 -12.893 6.498 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.072 4.072 4 C -0.034 4.034 5 H 0.045 0.955 6 N -0.309 5.309 7 C 0.083 3.917 8 C -0.574 4.574 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.800 3.200 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.155 4.155 17 C -0.004 4.004 18 C -0.219 4.219 19 C -0.180 4.180 20 H 0.081 0.919 21 H 0.103 0.897 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.155 0.845 26 H -0.024 1.024 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.298 -12.794 5.830 16.856 hybrid contribution 1.009 1.057 0.237 1.480 sum -8.289 -11.737 6.066 15.597 Atomic orbital electron populations 1.22607 0.87047 1.02794 1.01020 1.64807 1.09277 1.13797 1.36977 1.22964 0.94767 0.89973 0.99487 1.22366 0.95275 0.89694 0.96055 0.95516 1.60584 1.43471 1.14948 1.11858 1.19212 0.90497 0.91473 0.90489 1.21577 1.36768 1.03133 0.95900 0.91606 1.25997 0.95995 1.02480 0.95369 1.70108 1.43672 1.36444 1.07324 0.85238 0.77825 0.78081 0.78852 1.18541 1.20223 1.20388 1.22699 0.98094 0.96194 0.98482 1.21869 0.93760 0.95914 0.88858 1.22366 0.99611 1.01411 0.98549 1.21713 1.01863 0.92584 1.01808 0.91927 0.89662 0.94339 0.93735 0.92678 0.84456 1.02399 0.98395 0.92584 0.90318 0.90159 0.90748 0.90718 0.93776 0.93188 0.90802 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 8.33 127.69 1.06 1.38 16 2 N -0.52 -15.13 5.17 -859.93 -4.45 -19.58 16 3 C 0.06 2.04 6.21 86.65 0.54 2.58 16 4 C 0.08 2.92 3.36 46.12 0.16 3.07 16 5 H 0.03 1.13 7.86 -2.39 -0.02 1.11 16 6 N -0.68 -30.08 6.32 -489.35 -3.09 -33.17 16 7 C 0.21 11.70 5.31 85.56 0.45 12.15 16 8 C -0.54 -31.14 9.32 25.60 0.24 -30.90 16 9 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 10 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 11 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 12 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C -0.12 -3.33 5.71 31.47 0.18 -3.15 16 17 C 0.09 2.11 0.89 3.67 0.00 2.11 16 18 C -0.16 -3.31 6.97 71.98 0.50 -2.81 16 19 C -0.12 -2.48 8.63 71.98 0.62 -1.86 16 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.08 1.60 7.87 -2.38 -0.02 1.58 16 22 H 0.04 0.86 6.14 -2.39 -0.01 0.84 16 23 H 0.04 1.65 8.00 -2.39 -0.02 1.63 16 24 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.34 14.03 8.40 -89.69 -0.75 13.28 16 26 H -0.04 -2.49 8.08 -2.39 -0.02 -2.51 16 27 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.08 2.06 7.69 -2.39 -0.02 2.04 16 30 H 0.08 2.22 7.52 -2.39 -0.02 2.21 16 31 H 0.07 1.30 6.66 -2.39 -0.02 1.28 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.04 7.63 -2.39 -0.02 1.03 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -64.78 284.80 -0.74 -65.52 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.28 Total: 14.77 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.22 Total: -16.98 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -7.26 Total: -110.08 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.78 -0.74 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694170065.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.810 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds