Wall clock time and date at job start Mon Mar 30 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.47479 * 110.99896 * 74.02718 * 13 12 11 15 15 C 1.53504 * 87.93392 * 138.71012 * 14 13 12 16 16 C 1.52997 * 114.17376 * 220.33240 * 15 14 13 17 17 N 1.46901 * 109.46989 * 268.83995 * 16 15 14 18 18 C 1.47470 * 111.00419 * 170.00112 * 13 12 11 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 25 25 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 26 26 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 27 27 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 28 28 H 1.09005 * 113.48002 * 253.47716 * 14 13 12 29 29 H 1.09001 * 113.47456 * 23.93641 * 14 13 12 30 30 H 1.09000 * 114.34502 * 87.63428 * 15 14 13 31 31 H 1.09004 * 109.47168 * 28.83785 * 16 15 14 32 32 H 1.08999 * 109.47568 * 148.84046 * 16 15 14 33 33 H 1.00904 * 110.99815 * 179.97438 * 17 16 15 34 34 H 1.00896 * 110.99891 * 303.94739 * 17 16 15 35 35 H 1.08999 * 113.47873 * 336.06301 * 18 13 12 36 36 H 1.09004 * 113.47913 * 106.53613 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 7 1.7402 -7.4222 0.0035 14 6 1.1474 -7.6914 -1.3198 15 6 1.5730 -9.1566 -1.1507 16 6 2.1217 -9.8007 -2.4254 17 7 1.0240 -10.4414 -3.1619 18 6 2.6501 -8.5580 -0.2351 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.8541 -5.0447 0.8922 25 1 0.8534 -5.0451 -0.8877 26 1 3.1012 -6.0925 -0.8876 27 1 3.1013 -6.0919 0.8923 28 1 0.0664 -7.5537 -1.3475 29 1 1.6588 -7.1820 -2.1365 30 1 0.8434 -9.7796 -0.6334 31 1 2.5806 -9.0349 -3.0509 32 1 2.8683 -10.5498 -2.1617 33 1 1.3609 -10.8741 -4.0089 34 1 0.5410 -11.1104 -2.5812 35 1 3.5627 -8.2799 -0.7624 36 1 2.8428 -9.1548 0.6564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712554796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:24 Heat of formation + Delta-G solvation = 10.040092 kcal Electronic energy + Delta-G solvation = -13748.351620 eV Core-core repulsion = 11460.474066 eV Total energy + Delta-G solvation = -2287.877555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25190 -35.36916 -34.28145 -32.47076 -30.09135 -27.41180 -25.96675 -24.89677 -22.87044 -20.80884 -19.99979 -19.82493 -16.24822 -16.18545 -15.87164 -15.24896 -14.98187 -14.66860 -14.38441 -13.71668 -13.27396 -12.63676 -12.44178 -12.22811 -11.86543 -11.37979 -11.32104 -11.00021 -10.82450 -10.60121 -10.46466 -10.39013 -10.27156 -9.58411 -9.20934 -9.00525 -8.96150 -8.77755 -8.29092 -5.94156 -3.96532 3.36459 3.40483 3.43115 4.03764 4.05927 4.50077 4.50736 4.75636 5.10408 5.17197 5.23948 5.30316 5.40892 5.41306 5.48032 5.53427 5.64581 5.87934 5.93267 6.07684 6.19714 6.27935 6.38801 6.63981 6.80759 6.86451 7.01489 7.10991 7.13194 7.27785 7.74665 7.91201 8.07027 8.49659 9.10769 9.67005 11.17184 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.068280 B = 0.004285 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.977796 B = 6532.314808 C = 6642.530681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.022 3.978 13 N -0.474 5.474 14 C 0.013 3.987 15 C -0.115 4.115 16 C 0.071 3.929 17 N -0.849 5.849 18 C 0.000 4.000 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.016 0.984 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.340 0.660 34 H 0.340 0.660 35 H 0.066 0.934 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -19.842 -3.608 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.107 4.107 13 N -0.196 5.196 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.060 4.060 17 N -0.379 5.379 18 C -0.129 4.129 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.745 -18.907 -3.039 19.512 hybrid contribution 1.570 0.220 -0.530 1.672 sum 5.315 -18.687 -3.569 19.753 Atomic orbital electron populations 1.69959 1.06045 1.26618 1.50930 1.25035 0.94846 0.99206 0.95432 0.86668 0.79585 0.83225 0.78568 1.20292 1.21291 1.20267 1.21258 0.92966 0.91244 1.50462 0.92840 1.19086 0.94025 0.91304 0.97169 1.21602 0.99080 0.94040 0.99989 1.21578 0.97748 0.93583 1.02052 1.22768 0.96690 0.90461 1.00745 1.68942 1.20224 1.02331 1.28110 1.23775 1.02048 0.94083 0.91678 1.22759 0.98628 0.96648 0.95375 1.21785 0.92029 0.97819 0.94356 1.58658 1.29766 1.39470 1.09979 1.23828 0.95533 0.94467 0.99110 0.92993 0.96724 0.96606 0.93737 0.93487 0.91765 0.92654 0.94441 0.90906 0.89750 0.91292 0.88241 0.90893 0.95378 0.84746 0.84742 0.91530 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 11 C -0.11 -2.05 5.32 -26.74 -0.14 -2.19 16 12 C 0.02 0.33 4.82 -3.83 -0.02 0.31 16 13 N -0.47 -6.60 6.41 -244.66 -1.57 -8.17 16 14 C 0.01 0.16 6.57 -7.56 -0.05 0.11 16 15 C -0.11 -1.15 4.24 -90.09 -0.38 -1.53 16 16 C 0.07 0.60 6.69 -3.82 -0.03 0.57 16 17 N -0.85 -6.63 9.62 -10.37 -0.10 -6.73 16 18 C 0.00 0.00 7.29 -7.56 -0.06 -0.05 16 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 20 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 26 H 0.04 0.55 7.56 -51.93 -0.39 0.15 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.89 7.43 -51.93 -0.39 0.50 16 30 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 32 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.34 2.07 9.08 -39.29 -0.36 1.72 16 34 H 0.34 2.22 8.98 -39.29 -0.35 1.87 16 35 H 0.07 0.68 7.73 -51.93 -0.40 0.27 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -31.42 293.54 -9.35 -40.78 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.46 Total: -1.56 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.36 Total: -18.89 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.93 Total: -41.89 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.42 -9.35 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712554796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.817 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds