Wall clock time and date at job start Mon Mar 30 2020 20:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 N 1.46897 * 109.52375 * 305.00133 * 3 2 1 5 5 C 1.53121 * 109.52110 * 65.12844 * 3 2 1 6 6 C 1.53168 * 109.20753 * 177.56061 * 5 3 2 7 7 N 1.46841 * 109.55673 * 300.86322 * 6 5 3 8 8 C 1.46904 * 111.00098 * 185.84171 * 7 6 5 9 9 C 1.50705 * 109.46643 * 300.34106 * 8 7 6 10 10 H 1.07997 * 120.00404 * 4.83433 * 9 8 7 11 11 C 1.37880 * 119.99453 * 184.83370 * 9 8 7 12 12 N 1.31507 * 120.00654 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99513 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47203 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47473 * 119.99909 * 13 11 9 16 16 H 1.48504 * 109.47165 * 239.99612 * 13 11 9 17 17 C 1.46845 * 111.20332 * 61.74016 * 7 6 5 18 18 C 1.53040 * 109.52004 * 298.26175 * 17 7 6 19 19 H 1.09004 * 109.46967 * 299.99988 * 1 2 3 20 20 H 1.08999 * 109.47208 * 59.99579 * 1 2 3 21 21 H 1.08994 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47045 * 240.00508 * 2 1 3 23 23 H 1.08999 * 109.47208 * 120.00421 * 2 1 3 24 24 H 1.00901 * 110.99849 * 60.00224 * 4 3 2 25 25 H 1.00903 * 110.99919 * 183.95210 * 4 3 2 26 26 H 1.09006 * 109.50061 * 297.56289 * 5 3 2 27 27 H 1.08998 * 109.50748 * 57.68122 * 5 3 2 28 28 H 1.08996 * 109.44987 * 180.83028 * 6 5 3 29 29 H 1.09005 * 109.43869 * 60.88466 * 6 5 3 30 30 H 1.08997 * 109.47416 * 60.33513 * 8 7 6 31 31 H 1.09001 * 109.47088 * 180.34344 * 8 7 6 32 32 H 0.96999 * 120.00457 * 179.97438 * 12 11 9 33 33 H 1.08995 * 109.46470 * 178.24208 * 17 7 6 34 34 H 1.08998 * 109.45874 * 58.27437 * 17 7 6 35 35 H 1.08997 * 109.50081 * 299.22919 * 18 17 7 36 36 H 1.09005 * 109.50101 * 179.11905 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4549 2.1701 -1.1341 5 6 1.6383 2.1272 1.3093 6 6 2.2043 3.5504 1.3280 7 7 3.6670 3.4993 1.2087 8 6 4.2547 4.8369 1.3620 9 6 3.7077 5.7510 0.2960 10 1 2.9375 5.3989 -0.3742 11 6 4.1906 7.0369 0.1764 12 7 5.1281 7.4659 0.9928 13 14 3.5120 8.1703 -1.1444 14 1 2.4729 7.4530 -1.9261 15 1 2.9125 9.3701 -0.5071 16 1 4.6117 8.5885 -2.0505 17 6 4.0751 2.8876 -0.0624 18 6 3.5662 1.4456 -0.1226 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.4478 2.1835 -1.0742 25 1 1.8262 3.1065 -1.1932 26 1 0.5513 2.1652 1.3815 27 1 2.0401 1.5651 2.1523 28 1 1.9331 4.0366 2.2651 29 1 1.7913 4.1160 0.4927 30 1 4.0029 5.2340 2.3453 31 1 5.3383 4.7711 1.2632 32 1 5.4681 8.3705 0.9084 33 1 5.1626 2.8924 -0.1350 34 1 3.6534 3.4565 -0.8910 35 1 3.9985 0.8726 0.6978 36 1 3.8559 0.9968 -1.0728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714754255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:32 Heat of formation + Delta-G solvation = -13.456196 kcal Electronic energy + Delta-G solvation = -15124.745206 eV Core-core repulsion = 12835.848776 eV Total energy + Delta-G solvation = -2288.896430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31186 -35.51719 -32.58561 -30.87952 -30.26486 -29.38889 -26.39395 -24.38266 -22.64168 -21.87159 -20.14423 -18.27724 -16.49347 -15.96132 -15.01719 -14.70465 -14.26606 -14.08054 -13.60742 -13.43140 -12.89419 -12.71141 -12.23608 -11.81354 -11.66575 -11.29313 -11.17405 -11.05246 -10.79491 -10.68135 -10.56049 -10.37170 -10.05496 -9.86043 -9.73990 -9.41035 -8.45159 -8.31961 -7.13827 -6.04026 -4.13873 3.24856 3.33237 3.36048 4.38667 4.81715 4.97608 5.06816 5.14462 5.26182 5.29097 5.45400 5.65302 5.74773 5.83535 6.01364 6.03450 6.09544 6.18969 6.25067 6.29663 6.33609 6.52732 6.53975 6.69439 6.75828 6.91577 7.30056 7.49854 7.55330 7.77910 7.88338 8.07169 8.27658 8.33113 8.96826 9.53253 11.00656 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045591 B = 0.008331 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.011390 B = 3359.993637 C = 3587.348307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.120 3.880 4 N -0.842 5.842 5 C -0.145 4.145 6 C 0.063 3.937 7 N -0.541 5.541 8 C 0.186 3.814 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.062 3.938 18 C -0.103 4.103 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.332 0.668 25 H 0.346 0.654 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -11.473 -1.513 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C 0.027 3.973 4 N -0.375 5.375 5 C -0.185 4.185 6 C -0.066 4.066 7 N -0.265 5.265 8 C 0.060 3.940 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.067 4.067 18 C -0.141 4.141 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.145 0.855 25 H 0.162 0.838 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.383 -12.167 -1.544 13.826 hybrid contribution -0.995 2.060 -0.603 2.365 sum -7.378 -10.107 -2.147 12.696 Atomic orbital electron populations 1.21814 0.96444 1.01128 1.01779 1.21524 0.95543 0.95877 1.01607 1.20784 0.94930 0.92951 0.88595 1.59095 1.10460 1.23033 1.44919 1.22469 0.99222 0.97844 0.98954 1.21869 0.89911 0.94080 1.00742 1.62426 1.07459 1.24631 1.31994 1.19757 0.95423 0.82463 0.96359 1.21770 1.21914 0.98030 1.17013 0.92569 1.24970 0.94820 0.98107 0.95914 1.69949 1.27905 1.17671 1.37379 0.86599 0.78985 0.80886 0.81909 1.19845 1.20985 1.20912 1.21861 0.99780 0.92930 0.92083 1.21664 0.93382 0.97935 1.01167 0.92866 0.92275 0.93259 0.91768 0.92087 0.85486 0.83774 0.92593 0.91494 0.91892 0.94795 0.95520 0.94810 0.92853 0.91789 0.94199 0.91651 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.21 37.16 0.34 -1.32 16 2 C -0.11 -1.32 5.16 -26.73 -0.14 -1.46 16 3 C 0.12 1.75 0.71 -131.48 -0.09 1.66 16 4 N -0.84 -12.49 8.66 0.84 0.01 -12.48 16 5 C -0.15 -2.24 4.76 -26.58 -0.13 -2.37 16 6 C 0.06 1.21 4.80 -3.77 -0.02 1.19 16 7 N -0.54 -11.60 4.86 -236.03 -1.15 -12.74 16 8 C 0.19 4.80 5.12 -4.97 -0.03 4.78 16 9 C -0.55 -14.94 7.73 -34.44 -0.27 -15.21 16 10 H 0.06 1.51 5.85 -52.49 -0.31 1.20 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 13 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.06 1.22 4.88 -3.83 -0.02 1.20 16 18 C -0.10 -1.65 5.08 -26.65 -0.14 -1.79 16 19 H 0.05 0.57 6.63 -51.93 -0.34 0.22 16 20 H 0.06 0.64 6.61 -51.93 -0.34 0.29 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.33 4.38 7.04 -39.29 -0.28 4.11 16 25 H 0.35 5.88 5.60 -39.29 -0.22 5.66 16 26 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 29 H 0.03 0.70 5.26 -51.93 -0.27 0.43 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 34 H 0.04 0.85 5.53 -51.93 -0.29 0.56 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 269.39 15.07 4.06 4.06 Total: -1.00 -28.19 269.39 -7.70 -35.89 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.75 Total: 6.01 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.58 Total: -11.60 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.40 Total: -50.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.19 -7.70 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714754255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.434 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds