Wall clock time and date at job start Mon Mar 30 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.52996 * 109.46674 * 119.99534 * 2 1 3 5 5 C 1.50704 * 109.46898 * 185.00435 * 4 2 1 6 6 H 1.08003 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00229 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99883 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47225 * 89.99646 * 9 7 5 11 11 H 1.48496 * 109.46762 * 209.99924 * 9 7 5 12 12 H 1.48499 * 109.46883 * 329.99540 * 9 7 5 13 13 O 1.42899 * 109.47131 * 239.99378 * 2 1 3 14 14 C 1.42903 * 113.99590 * 89.99950 * 13 2 1 15 15 H 1.08996 * 109.47435 * 330.00327 * 14 13 2 16 16 C 1.53006 * 109.46996 * 89.99876 * 14 13 2 17 17 C 1.52994 * 109.47197 * 209.99432 * 14 13 2 18 18 C 1.53782 * 113.61734 * 180.02562 * 17 14 13 19 19 C 1.53781 * 87.08260 * 220.02231 * 18 17 14 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 17 21 21 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47371 * 300.00305 * 1 2 3 23 23 H 1.08999 * 109.46456 * 60.00920 * 1 2 3 24 24 H 1.09003 * 109.47474 * 304.99735 * 4 2 1 25 25 H 1.08993 * 109.47437 * 65.00415 * 4 2 1 26 26 H 0.96997 * 119.99610 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47175 * 59.99919 * 16 14 13 28 28 H 1.08994 * 109.47196 * 179.97438 * 16 14 13 29 29 H 1.09006 * 109.47251 * 299.99985 * 16 14 13 30 30 H 1.08997 * 112.90864 * 311.25967 * 17 14 13 31 31 H 1.09001 * 113.61250 * 105.47049 * 18 17 14 32 32 H 1.08997 * 113.61225 * 334.56890 * 18 17 14 33 33 H 1.09002 * 113.61445 * 139.98212 * 19 18 17 34 34 H 1.09002 * 113.61408 * 270.79943 * 19 18 17 35 35 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 36 36 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3129 6 1 4.0790 -0.0860 0.5393 7 6 4.2304 -1.1933 2.3580 8 7 3.5764 -1.8375 3.2997 9 14 6.0922 -1.0619 2.4364 10 1 6.4709 0.1603 3.1899 11 1 6.6442 -2.2575 3.1227 12 1 6.6413 -0.9843 1.0589 13 8 2.0064 -0.6738 -1.1667 14 6 2.2001 0.1828 -2.2941 15 1 1.4940 1.0117 -2.2462 16 6 3.6293 0.7290 -2.2800 17 6 1.9699 -0.6098 -3.5823 18 6 2.1553 0.2247 -4.8606 19 6 0.9339 -0.5175 -5.4282 20 6 0.4861 -0.7360 -3.9733 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 1.6054 -0.2615 2.1370 25 1 1.7517 -1.7714 1.2057 26 1 4.0608 -2.2442 4.0351 27 1 4.3356 -0.1000 -2.3278 28 1 3.7772 1.3819 -3.1401 29 1 3.7935 1.2937 -1.3621 30 1 2.5067 -1.5582 -3.5986 31 1 3.0826 0.0097 -5.3917 32 1 1.9882 1.2917 -4.7134 33 1 0.2617 0.1218 -6.0006 34 1 1.1874 -1.4401 -5.9502 35 1 -0.1381 0.0679 -3.5832 36 1 0.0677 -1.7255 -3.7892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719691226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:41 Heat of formation + Delta-G solvation = -53.160889 kcal Electronic energy + Delta-G solvation = -14686.461980 eV Core-core repulsion = 12363.551074 eV Total energy + Delta-G solvation = -2322.910906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.17485 -37.03661 -33.24449 -31.68504 -29.78250 -27.32171 -25.78164 -25.09051 -23.13137 -21.17403 -20.03374 -19.12516 -16.45507 -16.14815 -15.13048 -15.06109 -14.41726 -13.92737 -13.20006 -12.96915 -12.53739 -12.38877 -12.18491 -11.78752 -11.52195 -11.48527 -11.44871 -11.19350 -11.05622 -10.62931 -10.53968 -10.34162 -10.14468 -9.99562 -9.88676 -9.22455 -9.07837 -8.47000 -8.28152 -5.91346 -3.90855 3.36824 3.42966 3.47364 4.36044 4.53545 4.72529 4.81971 4.92457 5.09752 5.45420 5.55594 5.56962 5.77090 5.79388 5.81496 5.85826 5.93900 5.96934 6.01806 6.08795 6.13384 6.20199 6.35215 6.39358 6.50111 6.62414 6.74431 6.83168 7.02654 7.63000 7.74835 8.07287 8.31863 8.53099 9.13521 9.70972 11.20593 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.038024 B = 0.007852 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.200435 B = 3565.066609 C = 4051.629680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.044 0.956 4 C 0.023 3.977 5 C -0.503 4.503 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 O -0.360 6.360 14 C 0.096 3.904 15 H 0.047 0.953 16 C -0.171 4.171 17 C -0.104 4.104 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.133 4.133 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.024 0.976 26 H 0.259 0.741 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 4.602 -13.869 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.062 0.938 4 C -0.013 4.013 5 C -0.541 4.541 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 O -0.279 6.279 14 C 0.038 3.962 15 H 0.065 0.935 16 C -0.228 4.228 17 C -0.122 4.122 18 C -0.170 4.170 19 C -0.181 4.181 20 C -0.171 4.171 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.503 4.302 -13.710 15.058 hybrid contribution 1.008 0.289 0.206 1.069 sum -3.495 4.591 -13.504 14.685 Atomic orbital electron populations 1.22345 0.98410 1.01796 1.00296 1.22373 0.90748 0.96012 0.87432 0.93780 1.19235 0.96281 0.96312 0.89511 1.21177 0.91933 1.33643 1.07388 0.92510 1.24995 0.98162 0.95582 0.95909 1.69962 1.35335 1.36490 1.12226 0.86630 0.86170 0.77376 0.78058 1.20851 1.21325 1.19909 1.88044 1.86308 1.34270 1.19252 1.21930 0.95343 0.92136 0.86793 0.93458 1.22260 0.97967 1.01304 1.01302 1.22630 0.96876 0.99838 0.92856 1.22895 0.98273 0.99234 0.96605 1.22821 0.98068 1.00465 0.96737 1.22929 0.96625 1.02045 0.95460 0.92429 0.92378 0.94244 0.95400 0.95714 0.93163 0.91932 0.92953 0.92101 0.88669 0.91572 0.90305 0.91863 0.90413 0.90495 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.52 37.16 0.35 -2.74 16 2 C 0.09 1.99 2.45 -26.73 -0.07 1.92 16 3 H 0.04 0.94 7.62 -51.93 -0.40 0.54 16 4 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.50 -14.54 8.88 -34.44 -0.31 -14.85 16 6 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 O -0.36 -7.72 9.39 -35.23 -0.33 -8.05 16 14 C 0.10 1.63 2.35 -26.73 -0.06 1.57 16 15 H 0.05 0.76 7.43 -51.93 -0.39 0.37 16 16 C -0.17 -2.84 9.32 37.16 0.35 -2.50 16 17 C -0.10 -1.48 3.49 -89.71 -0.31 -1.80 16 18 C -0.13 -1.51 6.68 -25.92 -0.17 -1.69 16 19 C -0.14 -1.52 8.08 -25.92 -0.21 -1.72 16 20 C -0.13 -1.69 7.65 -25.82 -0.20 -1.89 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.62 7.96 -51.93 -0.41 0.21 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 29 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 30 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.96 7.97 -51.93 -0.41 0.55 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 293.82 15.07 4.43 4.43 Total: -1.00 -30.66 293.82 -7.63 -38.29 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.59 Total: -3.31 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.86 Total: -21.71 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.33 Total: -8.05 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.66 -7.63 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719691226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.876 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds