Wall clock time and date at job start Mon Mar 30 2020 20:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47091 * 2 1 4 4 C 1.53003 * 109.46898 * 240.00060 * 2 1 3 5 5 C 1.50701 * 109.46569 * 175.00050 * 4 2 1 6 6 H 1.07996 * 120.00258 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99529 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00221 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99660 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47269 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47226 * 119.99735 * 9 7 5 12 12 H 1.48498 * 109.46663 * 239.99707 * 9 7 5 13 13 O 1.42901 * 109.46956 * 120.00100 * 2 1 3 14 14 C 1.42896 * 113.99677 * 265.92303 * 13 2 1 15 15 H 1.08997 * 109.47747 * 335.05666 * 14 13 2 16 16 C 1.53001 * 109.47131 * 95.05735 * 14 13 2 17 17 C 1.53004 * 109.47129 * 215.05329 * 14 13 2 18 18 C 1.53785 * 113.61218 * 157.50135 * 17 14 13 19 19 C 1.53789 * 87.07756 * 220.02335 * 18 17 14 20 20 C 1.53775 * 87.08164 * 25.43090 * 19 18 17 21 21 H 1.08995 * 109.46997 * 306.08934 * 1 2 3 22 22 H 1.08997 * 109.47269 * 66.09060 * 1 2 3 23 23 H 1.09002 * 109.46864 * 186.08909 * 1 2 3 24 24 H 1.09004 * 109.47169 * 294.99695 * 4 2 1 25 25 H 1.09000 * 109.47448 * 55.00016 * 4 2 1 26 26 H 0.97000 * 120.00018 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47378 * 178.67136 * 16 14 13 28 28 H 1.09005 * 109.47279 * 298.67623 * 16 14 13 29 29 H 1.09007 * 109.47242 * 58.66959 * 16 14 13 30 30 H 1.08998 * 112.85348 * 288.80829 * 17 14 13 31 31 H 1.09003 * 113.61481 * 334.56688 * 18 17 14 32 32 H 1.08997 * 113.61438 * 105.47409 * 18 17 14 33 33 H 1.09005 * 113.60962 * 270.88396 * 19 18 17 34 34 H 1.08997 * 113.61171 * 139.98626 * 19 18 17 35 35 H 1.08995 * 113.61695 * 220.01868 * 20 19 18 36 36 H 1.09006 * 113.61475 * 89.11719 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 3.5764 -1.8369 -3.3001 9 14 6.0921 -1.0614 -2.4366 10 1 6.5838 -0.2920 -1.2656 11 1 6.6854 -2.4226 -2.4196 12 1 6.4870 -0.3649 -3.6872 13 8 2.0063 -0.6737 1.1668 14 6 2.2876 0.1955 2.2656 15 1 2.5083 1.1950 1.8911 16 6 1.0719 0.2553 3.1927 17 6 3.4945 -0.3367 3.0410 18 6 4.2183 0.7390 3.8681 19 6 5.5356 0.0783 3.4287 20 6 4.7749 -0.4360 2.1952 21 1 -0.3633 0.6053 0.8304 22 1 -0.3633 0.4165 -0.9394 23 1 -0.3633 -1.0219 0.1090 24 1 1.7517 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0607 -2.2430 -4.0359 27 1 1.2947 0.8997 4.0431 28 1 0.2179 0.6565 2.6467 29 1 0.8367 -0.7478 3.5487 30 1 3.2705 -1.2438 3.6023 31 1 4.0864 1.7495 3.4813 32 1 4.0295 0.6666 4.9391 33 1 5.8705 -0.7150 4.0972 34 1 6.3236 0.7923 3.1895 35 1 5.0355 -1.4567 1.9157 36 1 4.7951 0.2533 1.3510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719691230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:44 Heat of formation + Delta-G solvation = -68.143712 kcal Electronic energy + Delta-G solvation = -14912.284588 eV Core-core repulsion = 12588.723978 eV Total energy + Delta-G solvation = -2323.560610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35739 -38.41350 -35.30001 -33.37104 -31.40637 -29.29354 -26.57888 -26.23552 -25.11906 -22.40086 -21.93384 -20.21731 -18.42995 -17.56242 -16.82710 -16.24953 -16.11726 -15.53239 -14.76225 -14.29572 -14.01385 -13.63427 -13.42535 -13.29750 -13.29640 -13.20877 -12.81280 -12.67990 -12.55864 -12.44782 -12.13967 -11.82934 -11.37979 -11.34892 -11.17352 -10.95685 -10.86049 -10.55188 -10.04591 -8.15886 -6.22500 1.36807 1.38052 1.50624 2.42065 2.92477 3.19725 3.77586 3.84190 3.95737 4.10696 4.22616 4.32969 4.39027 4.43478 4.55209 4.62031 4.82160 4.88064 4.90382 4.92814 4.97493 5.09759 5.14288 5.18926 5.23595 5.27926 5.38307 5.45283 5.51570 5.56411 5.69473 5.85214 6.29532 6.75883 6.91217 7.43737 8.96864 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.023716 B = 0.011764 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.373907 B = 2379.656308 C = 3430.497111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 H 0.047 0.953 4 C 0.024 3.976 5 C -0.512 4.512 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.278 1.278 13 O -0.385 6.385 14 C 0.086 3.914 15 H 0.051 0.949 16 C -0.163 4.163 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.141 4.141 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.050 0.950 24 H -0.011 1.011 25 H 0.008 0.992 26 H 0.261 0.739 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 6.346 14.516 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.065 0.935 4 C -0.014 4.014 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.204 1.204 13 O -0.305 6.305 14 C 0.028 3.972 15 H 0.069 0.931 16 C -0.220 4.220 17 C -0.127 4.127 18 C -0.152 4.152 19 C -0.174 4.174 20 C -0.178 4.178 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.723 6.063 14.380 15.623 hybrid contribution 0.743 -0.191 -0.859 1.151 sum 0.020 5.872 13.521 14.741 Atomic orbital electron populations 1.22299 0.95514 1.01973 1.02179 1.22160 0.93055 0.94646 0.85864 0.93518 1.19173 0.95734 0.94644 0.91800 1.21566 0.93065 1.33145 1.07220 0.92090 1.25871 1.03116 0.95320 0.95601 1.70098 1.37222 1.37631 1.12976 0.85558 0.80348 0.77892 0.78322 1.18467 1.20849 1.20370 1.87953 1.85821 1.34872 1.21812 1.22331 0.94957 0.92592 0.87316 0.93122 1.22280 0.97421 1.02524 0.99788 1.22697 0.92695 1.00078 0.97245 1.22844 0.94665 0.97447 1.00270 1.22859 0.97014 1.00614 0.96871 1.22800 0.97461 1.00424 0.97149 0.90978 0.91818 0.93073 0.99235 0.97376 0.93069 0.89836 0.92433 0.92493 0.89084 0.89860 0.89158 0.89096 0.91123 0.93846 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 9.43 71.98 0.68 -5.03 16 2 C 0.10 4.34 2.69 30.60 0.08 4.42 16 3 H 0.05 1.97 7.26 -2.39 -0.02 1.95 16 4 C 0.02 1.29 4.68 29.85 0.14 1.43 16 5 C -0.51 -29.81 8.88 25.60 0.23 -29.58 16 6 H 0.06 3.45 6.42 -2.91 -0.02 3.43 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 9 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 10 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 O -0.38 -16.35 9.17 -148.98 -1.37 -17.71 16 14 C 0.09 2.78 2.52 30.60 0.08 2.85 16 15 H 0.05 1.65 7.05 -2.39 -0.02 1.63 16 16 C -0.16 -4.11 9.48 71.98 0.68 -3.42 16 17 C -0.11 -3.22 3.36 -10.27 -0.03 -3.25 16 18 C -0.12 -2.57 7.63 31.12 0.24 -2.33 16 19 C -0.14 -3.39 8.08 31.12 0.25 -3.14 16 20 C -0.14 -4.85 7.44 31.12 0.23 -4.62 16 21 H 0.07 2.08 6.32 -2.39 -0.02 2.07 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 24 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.42 6.26 -2.38 -0.01 1.40 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.33 6.78 -2.38 -0.02 2.32 16 Total: -1.00 -66.47 288.87 5.00 -61.47 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.02 Total: 9.14 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 3.04 Total: -42.37 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.43 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.37 Total: -17.71 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -66.47 5.00 -61.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719691230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.671 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds