Wall clock time and date at job start Mon Mar 30 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 C 1.53001 * 109.46865 * 185.11653 * 3 2 1 5 5 C 1.53005 * 109.46815 * 174.74624 * 4 3 2 6 6 O 1.42895 * 109.47159 * 65.11446 * 3 2 1 7 7 C 1.42896 * 114.00147 * 249.62282 * 6 3 2 8 8 C 1.53010 * 109.47043 * 175.14600 * 7 6 3 9 9 C 1.50694 * 115.54777 * 63.54817 * 8 7 6 10 10 H 1.08001 * 120.00587 * 267.54938 * 9 8 7 11 11 C 1.37879 * 119.99684 * 87.55223 * 9 8 7 12 12 N 1.31517 * 120.00010 * 179.26596 * 11 9 8 13 13 Si 1.86803 * 120.00053 * 359.26388 * 11 9 8 14 14 H 1.48503 * 109.47047 * 91.62830 * 13 11 9 15 15 H 1.48507 * 109.47073 * 211.62527 * 13 11 9 16 16 H 1.48497 * 109.47245 * 331.62708 * 13 11 9 17 17 C 1.53000 * 117.49574 * 277.87819 * 8 7 6 18 18 C 1.52998 * 117.49666 * 209.22180 * 8 7 6 19 19 H 1.09002 * 109.47262 * 304.16090 * 1 2 3 20 20 H 1.09000 * 109.47500 * 64.16409 * 1 2 3 21 21 H 1.09006 * 109.47015 * 184.16633 * 1 2 3 22 22 H 1.09004 * 109.46725 * 240.00607 * 2 1 3 23 23 H 1.08994 * 109.47321 * 120.00282 * 2 1 3 24 24 H 1.09000 * 109.47060 * 305.11300 * 3 2 1 25 25 H 1.08994 * 109.47307 * 294.74585 * 4 3 2 26 26 H 1.09001 * 109.47232 * 54.74771 * 4 3 2 27 27 H 1.09000 * 109.47070 * 65.79532 * 5 4 3 28 28 H 1.08998 * 109.46996 * 185.79397 * 5 4 3 29 29 H 1.08997 * 109.46738 * 305.78989 * 5 4 3 30 30 H 1.08995 * 109.47649 * 295.14686 * 7 6 3 31 31 H 1.09006 * 109.46731 * 55.15376 * 7 6 3 32 32 H 0.96995 * 120.00356 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.50458 * 0.02562 * 17 8 7 34 34 H 1.09008 * 117.49413 * 145.02101 * 17 8 7 35 35 H 1.09003 * 117.49787 * 214.97906 * 18 8 7 36 36 H 1.09000 * 117.50074 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5645 1.4444 -0.1286 5 6 4.0634 2.8848 -0.2604 6 8 1.6642 2.0806 1.2221 7 6 0.6677 3.0929 1.0669 8 6 0.2572 3.6198 2.4434 9 6 1.3445 4.3100 3.2259 10 1 1.9501 3.7473 3.9209 11 6 1.5663 5.6600 3.0545 12 7 2.5057 6.2653 3.7480 13 14 0.5325 6.6293 1.8374 14 1 -0.6481 7.1997 2.5346 15 1 1.3471 7.7297 1.2622 16 1 0.0768 5.7291 0.7479 17 6 -0.7746 2.8098 3.2310 18 6 -1.1703 4.1475 2.6009 19 1 -0.3634 0.5771 0.8504 20 1 -0.3634 0.4478 -0.9249 21 1 -0.3633 -1.0250 0.0747 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 1.6037 1.9821 -0.8407 25 1 4.0045 0.9872 0.7575 26 1 3.8553 0.8769 -1.0127 27 1 3.8637 3.4246 0.6653 28 1 5.1358 2.8815 -0.4549 29 1 3.5460 3.3744 -1.0854 30 1 1.0707 3.9110 0.4701 31 1 -0.2032 2.6714 0.5647 32 1 2.6620 7.2149 3.6272 33 1 -1.1606 1.9013 2.7687 34 1 -0.6671 2.7765 4.3152 35 1 -1.3230 4.9937 3.2708 36 1 -1.8168 4.1197 1.7238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721633456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:53 Heat of formation + Delta-G solvation = -41.372355 kcal Electronic energy + Delta-G solvation = -15017.577494 eV Core-core repulsion = 12695.177778 eV Total energy + Delta-G solvation = -2322.399717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.34699 -36.44928 -33.18345 -32.00342 -31.78012 -27.01154 -25.74700 -24.61090 -21.71617 -21.60333 -20.51886 -18.91521 -16.73992 -15.82905 -15.35382 -14.68750 -14.19016 -13.70818 -13.51371 -13.19707 -12.88612 -12.52846 -12.46470 -12.19848 -11.45477 -11.38311 -11.11071 -10.95955 -10.93673 -10.55587 -10.51931 -10.41130 -10.15773 -9.93439 -9.49995 -9.13003 -8.61225 -8.47653 -8.39410 -6.02238 -4.02538 3.31103 3.40255 3.43487 4.27476 4.47274 4.99092 5.11073 5.25428 5.27836 5.36211 5.52701 5.69269 5.71179 5.79771 5.87748 6.04867 6.06137 6.11080 6.15429 6.23356 6.31174 6.34564 6.34895 6.46350 6.48053 6.55056 6.60959 6.78306 6.85690 7.10437 7.20547 7.81369 8.11727 8.62657 9.04125 9.60811 11.10260 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.011768 C = 0.009571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.523700 B = 2378.703978 C = 2924.829226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.083 3.917 4 C -0.124 4.124 5 C -0.153 4.153 6 O -0.353 6.353 7 C 0.103 3.897 8 C 0.003 3.997 9 C -0.470 4.470 10 H 0.079 0.921 11 C 0.074 3.926 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.262 1.262 17 C -0.174 4.174 18 C -0.200 4.200 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -8.669 -9.081 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.024 3.976 4 C -0.162 4.162 5 C -0.211 4.211 6 O -0.271 6.271 7 C 0.026 3.974 8 C 0.002 3.998 9 C -0.507 4.507 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.539 5.539 13 Si 0.706 3.294 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.186 1.186 17 C -0.211 4.211 18 C -0.237 4.237 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.669 -8.531 -8.864 12.588 hybrid contribution -0.671 0.751 -0.935 1.374 sum -3.340 -7.780 -9.799 12.950 Atomic orbital electron populations 1.21790 0.96051 1.01293 1.01962 1.21912 0.96211 0.97283 1.01910 1.22111 0.94396 0.92556 0.88535 1.21710 0.95110 0.97864 1.01475 1.21746 0.99696 0.96591 1.03033 1.88043 1.58650 1.52318 1.28132 1.22382 0.88647 0.88828 0.97513 1.19324 0.88853 0.98726 0.92879 1.20222 1.14929 0.92915 1.22665 0.90322 1.24967 0.94933 0.97499 0.95330 1.69894 1.32262 1.10537 1.41203 0.86898 0.80256 0.79698 0.82582 1.20547 1.22149 1.18604 1.22773 1.06039 0.92763 0.99555 1.22984 1.00105 0.98254 1.02335 0.91673 0.93459 0.93152 0.91942 0.91241 0.93005 0.91233 0.92084 0.90611 0.93370 0.93654 0.94068 0.96097 0.92745 0.91049 0.89544 0.89212 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.43 37.16 0.35 -1.71 16 2 C -0.14 -1.87 5.64 -26.73 -0.15 -2.02 16 3 C 0.08 1.35 2.23 -26.73 -0.06 1.29 16 4 C -0.12 -1.87 5.64 -26.73 -0.15 -2.02 16 5 C -0.15 -2.51 9.75 37.16 0.36 -2.14 16 6 O -0.35 -7.38 9.11 -35.23 -0.32 -7.70 16 7 C 0.10 2.22 4.74 37.16 0.18 2.40 16 8 C 0.00 0.07 1.05 -155.66 -0.16 -0.09 16 9 C -0.47 -13.39 9.34 -34.44 -0.32 -13.71 16 10 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 13 Si 0.88 21.86 24.83 -169.99 -4.22 17.63 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.26 -6.14 5.76 56.52 0.33 -5.82 16 17 C -0.17 -3.67 9.96 -26.70 -0.27 -3.94 16 18 C -0.20 -4.31 7.53 -26.70 -0.20 -4.51 16 19 H 0.06 1.00 6.66 -51.93 -0.35 0.66 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.82 7.63 -51.93 -0.40 0.43 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.52 7.98 -51.93 -0.41 1.10 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.93 6.77 -51.93 -0.35 0.58 16 31 H 0.02 0.40 6.93 -51.93 -0.36 0.04 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 35 H 0.09 2.02 7.17 -51.93 -0.37 1.65 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -29.99 287.72 -6.48 -36.47 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.52 Total: 0.60 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -0.52 Total: -24.41 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.32 Total: -7.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.22 Total: 17.63 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.99 -6.48 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721633456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.899 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds