Wall clock time and date at job start Mon Mar 30 2020 20:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48504 * 109.46657 * 269.99642 * 3 2 1 5 5 H 1.48493 * 109.47462 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00234 * 3 2 1 7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47005 * 35.00510 * 11 10 9 13 13 C 1.52998 * 109.47160 * 275.00077 * 11 10 9 14 14 C 1.53000 * 109.47012 * 299.99801 * 13 11 10 15 15 C 1.52994 * 109.47410 * 299.99924 * 14 13 11 16 16 C 1.53007 * 109.47007 * 59.99923 * 15 14 13 17 17 H 1.09002 * 109.46474 * 60.00286 * 16 15 14 18 18 C 1.53002 * 109.46926 * 179.97438 * 16 15 14 19 19 N 1.46896 * 109.47441 * 294.99933 * 18 16 15 20 20 C 1.52992 * 109.47232 * 300.00065 * 16 15 14 21 21 H 0.96997 * 120.00478 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 23 23 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 24 24 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 25 25 H 1.09001 * 109.47093 * 60.00016 * 13 11 10 26 26 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 27 27 H 1.09002 * 109.47176 * 60.00036 * 14 13 11 28 28 H 1.09007 * 109.47050 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47548 * 179.97438 * 15 14 13 30 30 H 1.09002 * 109.47517 * 299.99953 * 15 14 13 31 31 H 1.09000 * 109.46800 * 55.00667 * 18 16 15 32 32 H 1.09004 * 109.46836 * 174.99860 * 18 16 15 33 33 H 1.00901 * 110.99971 * 180.02562 * 19 18 16 34 34 H 1.00896 * 111.00225 * 303.95895 * 19 18 16 35 35 H 1.09002 * 109.47274 * 300.00009 * 20 16 15 36 36 H 1.08997 * 109.47063 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 1 0.5926 -4.8250 -0.5910 13 6 1.1515 -5.2959 1.4356 14 6 2.4331 -5.4110 2.2634 15 6 3.3394 -6.4823 1.6538 16 6 3.6935 -6.0935 0.2170 17 1 4.2131 -5.1353 0.2175 18 6 4.6005 -7.1645 -0.3924 19 7 5.8796 -7.1916 0.3293 20 6 2.4120 -5.9784 -0.6108 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8408 -3.5486 0.7808 25 1 0.5057 -4.5326 1.8699 26 1 0.6315 -6.2539 1.4351 27 1 2.9526 -4.4528 2.2638 28 1 2.1808 -5.6885 3.2869 29 1 4.2527 -6.5641 2.2433 30 1 2.8199 -7.4406 1.6533 31 1 4.1172 -8.1383 -0.3122 32 1 4.7805 -6.9337 -1.4424 33 1 6.4968 -7.8913 -0.0549 34 1 6.3168 -6.2823 0.3246 35 1 1.8925 -6.9366 -0.6113 36 1 2.6643 -5.7009 -1.6342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724088047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:00 Heat of formation + Delta-G solvation = -28.007784 kcal Electronic energy + Delta-G solvation = -14647.786568 eV Core-core repulsion = 12358.259134 eV Total energy + Delta-G solvation = -2289.527434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01765 -35.27040 -33.37841 -31.90077 -30.33791 -28.93611 -25.77165 -24.38987 -21.99856 -21.74374 -20.68267 -18.47072 -16.44085 -15.94386 -14.92242 -14.64824 -14.45983 -14.30976 -14.25495 -13.65414 -12.91300 -12.49588 -12.02174 -11.72635 -11.66432 -11.52905 -11.50769 -11.20529 -10.81090 -10.61442 -10.55397 -10.06651 -9.88597 -9.79919 -9.53600 -9.10765 -8.65830 -8.45108 -7.17101 -6.00406 -4.02058 3.33335 3.38963 3.42746 4.45195 4.58986 4.94869 5.09638 5.18047 5.35006 5.36156 5.50760 5.57431 5.73236 5.82284 5.87757 5.92160 5.99491 6.10285 6.14226 6.26482 6.43878 6.50647 6.58766 6.73011 6.78123 6.83193 7.12533 7.34271 7.41135 7.51406 7.82918 8.18636 8.48708 8.70083 9.07938 9.62770 11.10656 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039570 B = 0.007001 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.430154 B = 3998.694932 C = 4293.304230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.086 3.914 12 H 0.068 0.932 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.100 4.100 16 C -0.083 4.083 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.851 5.851 20 C -0.098 4.098 21 H 0.261 0.739 22 H 0.025 0.975 23 H -0.014 1.014 24 H 0.329 0.671 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.024 0.976 33 H 0.335 0.665 34 H 0.341 0.659 35 H 0.052 0.948 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -13.231 1.243 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.025 4.025 12 H 0.087 0.913 13 C -0.187 4.187 14 C -0.159 4.159 15 C -0.138 4.138 16 C -0.102 4.102 17 H 0.097 0.903 18 C -0.065 4.065 19 N -0.380 5.380 20 C -0.136 4.136 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.004 0.996 24 H 0.148 0.852 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.071 0.929 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.190 -13.284 1.189 14.704 hybrid contribution 0.355 1.202 -0.042 1.254 sum 6.546 -12.082 1.148 13.789 Atomic orbital electron populations 1.69964 1.06060 1.26689 1.51088 1.24987 0.94856 0.99300 0.95437 0.86508 0.79702 0.83150 0.78092 1.20657 1.21325 1.19888 1.21206 0.93446 0.90394 1.50088 0.92124 1.19562 0.90725 0.87477 0.95587 1.60818 1.20759 1.00964 1.48986 1.21465 0.96211 0.91040 0.93819 0.91327 1.22183 0.97557 1.01050 0.97937 1.21540 0.96477 0.99556 0.98329 1.21440 0.99067 0.97623 0.95671 1.21115 0.95691 0.98384 0.95046 0.90347 1.21869 0.90502 0.99578 0.94552 1.58737 1.06888 1.11370 1.60976 1.21529 0.95392 0.97524 0.99205 0.92977 0.95662 0.99607 0.85166 0.92042 0.92652 0.91695 0.92689 0.91474 0.93028 0.91623 0.95741 0.85353 0.84684 0.92925 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.13 5.24 -4.97 -0.03 5.10 16 10 N -0.68 -14.69 5.75 -107.99 -0.62 -15.31 16 11 C 0.09 1.54 2.86 -67.71 -0.19 1.34 16 12 H 0.07 1.31 7.80 -51.93 -0.40 0.91 16 13 C -0.15 -2.41 5.52 -26.73 -0.15 -2.56 16 14 C -0.12 -1.80 5.67 -26.73 -0.15 -1.95 16 15 C -0.10 -1.34 5.09 -26.73 -0.14 -1.48 16 16 C -0.08 -1.14 2.09 -90.62 -0.19 -1.33 16 17 H 0.08 1.22 7.21 -51.93 -0.37 0.84 16 18 C 0.07 0.76 6.18 -3.82 -0.02 0.74 16 19 N -0.85 -8.86 9.08 -10.37 -0.09 -8.95 16 20 C -0.10 -1.45 4.92 -26.73 -0.13 -1.59 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 23 H -0.01 -0.39 7.44 -51.93 -0.39 -0.78 16 24 H 0.33 6.88 5.56 -39.29 -0.22 6.66 16 25 H 0.06 1.12 7.45 -51.93 -0.39 0.74 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.06 6.26 -51.93 -0.32 0.73 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.33 2.82 9.08 -39.29 -0.36 2.46 16 34 H 0.34 3.44 8.99 -39.29 -0.35 3.09 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -29.74 280.01 -8.33 -38.06 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.13 Total: 6.76 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.42 Total: -15.26 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.02 Total: -50.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.74 -8.33 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724088047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.056 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds