Wall clock time and date at job start Mon Mar 30 2020 20:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48504 * 109.46657 * 269.99642 * 3 2 1 5 5 H 1.48493 * 109.47462 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00234 * 3 2 1 7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46661 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47005 * 35.00510 * 11 10 9 13 13 C 1.52998 * 109.47160 * 275.00077 * 11 10 9 14 14 C 1.53000 * 109.47012 * 299.99801 * 13 11 10 15 15 C 1.52994 * 109.47410 * 299.99924 * 14 13 11 16 16 C 1.53007 * 109.47007 * 59.99923 * 15 14 13 17 17 H 1.09002 * 109.46474 * 60.00286 * 16 15 14 18 18 C 1.53002 * 109.46926 * 179.97438 * 16 15 14 19 19 N 1.46896 * 109.47441 * 294.99933 * 18 16 15 20 20 C 1.52992 * 109.47232 * 300.00065 * 16 15 14 21 21 H 0.96997 * 120.00478 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47155 * 60.00217 * 9 7 2 23 23 H 1.08997 * 109.47111 * 300.00138 * 9 7 2 24 24 H 1.00902 * 111.00533 * 56.04452 * 10 9 7 25 25 H 1.09001 * 109.47093 * 60.00016 * 13 11 10 26 26 H 1.09002 * 109.47121 * 179.97438 * 13 11 10 27 27 H 1.09002 * 109.47176 * 60.00036 * 14 13 11 28 28 H 1.09007 * 109.47050 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47548 * 179.97438 * 15 14 13 30 30 H 1.09002 * 109.47517 * 299.99953 * 15 14 13 31 31 H 1.09000 * 109.46800 * 55.00667 * 18 16 15 32 32 H 1.09004 * 109.46836 * 174.99860 * 18 16 15 33 33 H 1.00901 * 110.99971 * 180.02562 * 19 18 16 34 34 H 1.00896 * 111.00225 * 303.95895 * 19 18 16 35 35 H 1.09002 * 109.47274 * 300.00009 * 20 16 15 36 36 H 1.08997 * 109.47063 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 -0.0011 12 1 0.5926 -4.8250 -0.5910 13 6 1.1515 -5.2959 1.4356 14 6 2.4331 -5.4110 2.2634 15 6 3.3394 -6.4823 1.6538 16 6 3.6935 -6.0935 0.2170 17 1 4.2131 -5.1353 0.2175 18 6 4.6005 -7.1645 -0.3924 19 7 5.8796 -7.1916 0.3293 20 6 2.4120 -5.9784 -0.6108 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8408 -3.5486 0.7808 25 1 0.5057 -4.5326 1.8699 26 1 0.6315 -6.2539 1.4351 27 1 2.9526 -4.4528 2.2638 28 1 2.1808 -5.6885 3.2869 29 1 4.2527 -6.5641 2.2433 30 1 2.8199 -7.4406 1.6533 31 1 4.1172 -8.1383 -0.3122 32 1 4.7805 -6.9337 -1.4424 33 1 6.4968 -7.8913 -0.0549 34 1 6.3168 -6.2823 0.3246 35 1 1.8925 -6.9366 -0.6113 36 1 2.6643 -5.7009 -1.6342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724088047.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:00 Heat of formation + Delta-G solvation = -49.365246 kcal Electronic energy + Delta-G solvation = -14648.712697 eV Core-core repulsion = 12358.259134 eV Total energy + Delta-G solvation = -2290.453563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33568 -36.62335 -35.11702 -33.63753 -31.51739 -30.47259 -27.76673 -25.46382 -23.81874 -23.26001 -21.83132 -19.83617 -18.54663 -17.15052 -16.59846 -16.21735 -15.70556 -15.48549 -15.41439 -15.21895 -14.48273 -14.15738 -13.67084 -13.24882 -13.13593 -12.94672 -12.84101 -12.69588 -12.55091 -12.38506 -11.91623 -11.83333 -11.43500 -11.11947 -11.04174 -10.82050 -10.65091 -9.48833 -9.00080 -8.22823 -6.34241 1.39677 1.41751 1.52934 2.39238 3.10076 3.64682 3.68243 3.84169 3.98366 4.02491 4.28524 4.40746 4.52571 4.65746 4.67864 4.77882 4.81348 4.86537 4.94694 5.02730 5.11060 5.19217 5.23013 5.33376 5.40224 5.51226 5.54517 5.62932 5.68187 6.04357 6.30503 6.51055 6.68256 6.77109 6.93404 7.36996 8.88734 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039570 B = 0.007001 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.430154 B = 3998.694932 C = 4293.304230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.210 3.790 10 N -0.680 5.680 11 C 0.079 3.921 12 H 0.049 0.951 13 C -0.142 4.142 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.080 4.080 17 H 0.057 0.943 18 C 0.073 3.927 19 N -0.854 5.854 20 C -0.089 4.089 21 H 0.265 0.735 22 H -0.006 1.006 23 H -0.041 1.041 24 H 0.334 0.666 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.348 0.652 34 H 0.342 0.658 35 H 0.077 0.923 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -14.156 1.502 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.312 5.312 11 C -0.031 4.031 12 H 0.067 0.933 13 C -0.181 4.181 14 C -0.156 4.156 15 C -0.128 4.128 16 C -0.099 4.099 17 H 0.075 0.925 18 C -0.058 4.058 19 N -0.384 5.384 20 C -0.128 4.128 21 H 0.074 0.926 22 H 0.012 0.988 23 H -0.023 1.023 24 H 0.154 0.846 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.096 0.904 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.726 -14.242 1.447 16.267 hybrid contribution -0.157 1.437 -0.123 1.451 sum 7.569 -12.805 1.324 14.933 Atomic orbital electron populations 1.70097 1.07836 1.27958 1.51612 1.25966 0.95784 1.03405 0.94587 0.85334 0.78532 0.77956 0.78480 1.19814 1.20627 1.18714 1.21562 0.93717 0.91588 1.50505 0.91933 1.19178 0.90731 0.89122 0.92759 1.60728 1.19935 1.01223 1.49280 1.21609 0.96112 0.90275 0.95139 0.93261 1.22101 0.98192 1.01238 0.96606 1.21525 0.95700 0.99313 0.99084 1.21363 0.98906 0.97395 0.95118 1.21044 0.95204 0.98300 0.95322 0.92500 1.21740 0.90677 0.99039 0.94365 1.58708 1.06856 1.11943 1.60884 1.21449 0.95595 0.97151 0.98579 0.92645 0.98783 1.02330 0.84648 0.94955 0.90157 0.93707 0.91179 0.90984 0.91564 0.90549 0.95750 0.83873 0.84547 0.90406 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.16 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.65 5.24 85.56 0.45 12.10 16 10 N -0.68 -30.04 5.75 -495.56 -2.85 -32.90 16 11 C 0.08 2.86 2.86 44.92 0.13 2.99 16 12 H 0.05 1.95 7.80 -2.39 -0.02 1.93 16 13 C -0.14 -4.60 5.52 30.59 0.17 -4.43 16 14 C -0.12 -3.38 5.67 30.59 0.17 -3.21 16 15 C -0.09 -2.19 5.09 30.59 0.16 -2.03 16 16 C -0.08 -2.03 2.09 -10.79 -0.02 -2.05 16 17 H 0.06 1.71 7.21 -2.39 -0.02 1.69 16 18 C 0.07 1.49 6.18 86.30 0.53 2.02 16 19 N -0.85 -15.58 9.08 -186.72 -1.69 -17.28 16 20 C -0.09 -2.53 4.92 30.59 0.15 -2.38 16 21 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.01 -0.36 8.05 -2.39 -0.02 -0.38 16 23 H -0.04 -2.44 7.44 -2.39 -0.02 -2.46 16 24 H 0.33 14.27 5.56 -89.69 -0.50 13.78 16 25 H 0.03 1.21 7.45 -2.39 -0.02 1.20 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.46 6.26 -2.39 -0.01 1.44 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.07 1.72 7.75 -2.39 -0.02 1.71 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.35 4.90 9.08 -89.69 -0.81 4.09 16 34 H 0.34 6.22 8.99 -89.70 -0.81 5.42 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.47 280.01 -0.85 -65.32 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -1.05 Total: 22.84 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 2.44 Total: -27.65 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.26 Total: -107.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.47 -0.85 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724088047.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -64.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds