Wall clock time and date at job start Mon Mar 30 2020 20:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46963 * 2 1 4 4 C 1.52993 * 109.47156 * 120.00187 * 2 1 3 5 5 C 1.50699 * 109.47556 * 294.65466 * 4 2 1 6 6 H 1.08002 * 119.99472 * 354.92084 * 5 4 2 7 7 C 1.37872 * 120.00445 * 174.64398 * 5 4 2 8 8 N 1.31512 * 119.99929 * 0.27270 * 7 5 4 9 9 Si 1.86801 * 120.00143 * 180.28022 * 7 5 4 10 10 H 1.48492 * 109.47646 * 59.99388 * 9 7 5 11 11 H 1.48504 * 109.47221 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46579 * 299.99530 * 9 7 5 13 13 N 1.46899 * 109.47042 * 240.00215 * 2 1 3 14 14 C 1.48534 * 111.00122 * 181.99717 * 13 2 1 15 15 C 1.54932 * 103.22674 * 159.72079 * 14 13 2 16 16 H 1.08997 * 110.72710 * 80.94953 * 15 14 13 17 17 C 1.53000 * 110.72322 * 204.23086 * 15 14 13 18 18 C 1.54597 * 102.92579 * 322.58866 * 15 14 13 19 19 H 1.08996 * 110.39755 * 140.91738 * 18 15 14 20 20 N 1.46897 * 110.30805 * 263.04427 * 18 15 14 21 21 C 1.47902 * 111.00305 * 299.39627 * 13 2 1 22 22 H 1.08998 * 109.47018 * 60.00035 * 1 2 3 23 23 H 1.09000 * 109.46701 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46845 * 299.99631 * 1 2 3 25 25 H 1.09001 * 109.47482 * 174.65432 * 4 2 1 26 26 H 1.09004 * 109.47500 * 54.65431 * 4 2 1 27 27 H 0.97003 * 119.99964 * 180.02562 * 8 7 5 28 28 H 1.09000 * 110.66778 * 278.16053 * 14 13 2 29 29 H 1.08996 * 110.66281 * 41.28832 * 14 13 2 30 30 H 1.08999 * 109.47076 * 173.50405 * 17 15 14 31 31 H 1.09001 * 109.47355 * 293.50285 * 17 15 14 32 32 H 1.08993 * 109.47410 * 53.50404 * 17 15 14 33 33 H 1.00908 * 111.00141 * 177.16715 * 20 18 15 34 34 H 1.00905 * 110.99985 * 301.11692 * 20 18 15 35 35 H 1.09005 * 109.91807 * 333.51170 * 21 13 2 36 36 H 1.09000 * 109.91828 * 94.59918 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6488 0.0613 2.4761 6 1 1.1645 1.0212 2.3727 7 6 1.9037 -0.4505 3.7307 8 7 2.4932 -1.6193 3.8567 9 14 1.4116 0.5161 5.2515 10 1 -0.0571 0.7352 5.2451 11 1 1.7936 -0.2460 6.4675 12 1 2.1078 1.8278 5.2510 13 7 2.0197 -0.6924 -1.1995 14 6 3.5037 -0.7543 -1.2099 15 6 3.8032 -1.9162 -2.1900 16 1 3.7423 -1.5747 -3.2233 17 6 5.1752 -2.5285 -1.9007 18 6 2.6763 -2.9284 -1.8810 19 1 2.3166 -3.3890 -2.8010 20 7 3.1571 -3.9583 -0.9504 21 6 1.5574 -2.0971 -1.2265 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1258 -0.8049 1.2026 26 1 1.6007 -1.7176 1.2984 27 1 2.6723 -1.9796 4.7393 28 1 3.9251 0.1801 -1.5807 29 1 3.8862 -0.9820 -0.2150 30 1 5.3165 -3.4131 -2.5216 31 1 5.9533 -1.7990 -2.1251 32 1 5.2332 -2.8097 -0.8492 33 1 2.4165 -4.5985 -0.7054 34 1 3.9490 -4.4517 -1.3347 35 1 1.3792 -2.4490 -0.2103 36 1 0.6415 -2.1754 -1.8122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695784321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:50 Heat of formation + Delta-G solvation = 0.124985 kcal Electronic energy + Delta-G solvation = -15079.168291 eV Core-core repulsion = 12790.860785 eV Total energy + Delta-G solvation = -2288.307506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19294 -35.30962 -32.64502 -31.53153 -30.10727 -27.14403 -26.83173 -24.91271 -23.09532 -21.61242 -19.23143 -18.32021 -16.62001 -15.93226 -15.28422 -14.86255 -14.45330 -13.61795 -13.43141 -13.29334 -12.48977 -12.32827 -12.14583 -11.88210 -11.55757 -11.15691 -10.94250 -10.84685 -10.78338 -10.54396 -10.32434 -10.27683 -10.19798 -9.70636 -9.51103 -9.01591 -8.33081 -8.24357 -7.40991 -5.93319 -3.95360 3.35701 3.40160 3.42605 4.49005 4.63315 4.90489 4.99808 5.14222 5.37612 5.40581 5.67527 5.85533 5.91706 5.96445 6.08219 6.19952 6.26185 6.35686 6.38404 6.44830 6.50644 6.58205 6.71593 6.91967 7.01252 7.08035 7.42751 7.58729 7.66926 7.72819 7.83541 7.93854 8.11413 8.50746 9.10758 9.67072 11.17016 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.008838 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.799351 B = 3167.358497 C = 3467.600654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.069 3.931 3 H 0.067 0.933 4 C 0.000 4.000 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.517 5.517 14 C 0.036 3.964 15 C -0.089 4.089 16 H 0.072 0.928 17 C -0.140 4.140 18 C 0.085 3.915 19 H 0.032 0.968 20 N -0.835 5.835 21 C 0.034 3.966 22 H 0.037 0.963 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.019 0.981 26 H 0.026 0.974 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.338 0.662 34 H 0.336 0.664 35 H 0.074 0.926 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -2.931 -10.983 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.039 4.039 3 H 0.085 0.915 4 C -0.038 4.038 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.240 5.240 14 C -0.092 4.092 15 C -0.108 4.108 16 H 0.090 0.910 17 C -0.198 4.198 18 C -0.027 4.027 19 H 0.050 0.950 20 N -0.367 5.367 21 C -0.095 4.095 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.295 -2.142 -10.807 11.093 hybrid contribution -0.242 -0.653 0.905 1.142 sum 1.054 -2.795 -9.902 10.343 Atomic orbital electron populations 1.21680 0.95485 1.00863 1.00396 1.21927 0.94949 0.97860 0.89190 0.91451 1.19677 0.96475 0.96273 0.91376 1.21134 1.38937 1.04479 0.90902 0.92781 1.25005 0.95384 0.94974 0.98975 1.69976 1.42271 1.17563 1.23190 0.86729 0.78942 0.80094 0.82639 1.20329 1.21390 1.20335 1.65126 1.07076 1.12746 1.39086 1.23313 0.89520 0.96954 0.99367 1.22077 0.94247 0.95431 0.99083 0.90979 1.21671 0.95659 0.99557 1.02944 1.22148 0.95145 0.92776 0.92627 0.95004 1.58802 1.11910 1.18937 1.47026 1.22939 0.96027 0.89162 1.01373 0.94395 0.93797 0.91689 0.96288 0.95599 0.93115 0.91523 0.91130 0.93654 0.93138 0.90727 0.84889 0.85024 0.90756 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.92 37.16 0.33 -2.20 16 2 C 0.07 1.49 2.48 -67.71 -0.17 1.32 16 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 4 C 0.00 -0.01 3.81 -27.89 -0.11 -0.11 16 5 C -0.52 -14.59 8.31 -34.44 -0.29 -14.88 16 6 H 0.05 1.49 7.28 -52.49 -0.38 1.11 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.52 -9.90 5.32 -222.51 -1.18 -11.08 16 14 C 0.04 0.66 5.83 -1.90 -0.01 0.65 16 15 C -0.09 -1.33 3.63 -88.76 -0.32 -1.65 16 16 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 17 C -0.14 -1.86 8.03 37.16 0.30 -1.56 16 18 C 0.08 1.28 4.04 -66.36 -0.27 1.02 16 19 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 20 N -0.83 -12.21 8.23 -3.52 -0.03 -12.24 16 21 C 0.03 0.60 4.97 -2.75 -0.01 0.59 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.86 7.09 -51.93 -0.37 0.50 16 24 H 0.06 1.36 7.08 -51.93 -0.37 0.99 16 25 H 0.02 0.54 5.78 -51.93 -0.30 0.24 16 26 H 0.03 0.73 6.18 -51.93 -0.32 0.41 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.50 5.39 -51.93 -0.28 1.22 16 30 H 0.04 0.50 7.71 -51.93 -0.40 0.10 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.13 7.32 -51.93 -0.38 0.75 16 33 H 0.34 4.59 9.06 -39.29 -0.36 4.23 16 34 H 0.34 4.14 7.29 -39.29 -0.29 3.86 16 35 H 0.07 1.55 5.15 -51.93 -0.27 1.28 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -30.05 273.83 -7.82 -37.87 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.80 Total: 5.96 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.64 Total: -15.26 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.48 Total: -49.57 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.05 -7.82 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.993 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds