Wall clock time and date at job start Mon Mar 30 2020 20:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46963 * 2 1 4 4 C 1.52993 * 109.47156 * 120.00187 * 2 1 3 5 5 C 1.50699 * 109.47556 * 294.65466 * 4 2 1 6 6 H 1.08002 * 119.99472 * 354.92084 * 5 4 2 7 7 C 1.37872 * 120.00445 * 174.64398 * 5 4 2 8 8 N 1.31512 * 119.99929 * 0.27270 * 7 5 4 9 9 Si 1.86801 * 120.00143 * 180.28022 * 7 5 4 10 10 H 1.48492 * 109.47646 * 59.99388 * 9 7 5 11 11 H 1.48504 * 109.47221 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46579 * 299.99530 * 9 7 5 13 13 N 1.46899 * 109.47042 * 240.00215 * 2 1 3 14 14 C 1.48534 * 111.00122 * 181.99717 * 13 2 1 15 15 C 1.54932 * 103.22674 * 159.72079 * 14 13 2 16 16 H 1.08997 * 110.72710 * 80.94953 * 15 14 13 17 17 C 1.53000 * 110.72322 * 204.23086 * 15 14 13 18 18 C 1.54597 * 102.92579 * 322.58866 * 15 14 13 19 19 H 1.08996 * 110.39755 * 140.91738 * 18 15 14 20 20 N 1.46897 * 110.30805 * 263.04427 * 18 15 14 21 21 C 1.47902 * 111.00305 * 299.39627 * 13 2 1 22 22 H 1.08998 * 109.47018 * 60.00035 * 1 2 3 23 23 H 1.09000 * 109.46701 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46845 * 299.99631 * 1 2 3 25 25 H 1.09001 * 109.47482 * 174.65432 * 4 2 1 26 26 H 1.09004 * 109.47500 * 54.65431 * 4 2 1 27 27 H 0.97003 * 119.99964 * 180.02562 * 8 7 5 28 28 H 1.09000 * 110.66778 * 278.16053 * 14 13 2 29 29 H 1.08996 * 110.66281 * 41.28832 * 14 13 2 30 30 H 1.08999 * 109.47076 * 173.50405 * 17 15 14 31 31 H 1.09001 * 109.47355 * 293.50285 * 17 15 14 32 32 H 1.08993 * 109.47410 * 53.50404 * 17 15 14 33 33 H 1.00908 * 111.00141 * 177.16715 * 20 18 15 34 34 H 1.00905 * 110.99985 * 301.11692 * 20 18 15 35 35 H 1.09005 * 109.91807 * 333.51170 * 21 13 2 36 36 H 1.09000 * 109.91828 * 94.59918 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6488 0.0613 2.4761 6 1 1.1645 1.0212 2.3727 7 6 1.9037 -0.4505 3.7307 8 7 2.4932 -1.6193 3.8567 9 14 1.4116 0.5161 5.2515 10 1 -0.0571 0.7352 5.2451 11 1 1.7936 -0.2460 6.4675 12 1 2.1078 1.8278 5.2510 13 7 2.0197 -0.6924 -1.1995 14 6 3.5037 -0.7543 -1.2099 15 6 3.8032 -1.9162 -2.1900 16 1 3.7423 -1.5747 -3.2233 17 6 5.1752 -2.5285 -1.9007 18 6 2.6763 -2.9284 -1.8810 19 1 2.3166 -3.3890 -2.8010 20 7 3.1571 -3.9583 -0.9504 21 6 1.5574 -2.0971 -1.2265 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1258 -0.8049 1.2026 26 1 1.6007 -1.7176 1.2984 27 1 2.6723 -1.9796 4.7393 28 1 3.9251 0.1801 -1.5807 29 1 3.8862 -0.9820 -0.2150 30 1 5.3165 -3.4131 -2.5216 31 1 5.9533 -1.7990 -2.1251 32 1 5.2332 -2.8097 -0.8492 33 1 2.4165 -4.5985 -0.7054 34 1 3.9490 -4.4517 -1.3347 35 1 1.3792 -2.4490 -0.2103 36 1 0.6415 -2.1754 -1.8122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695784321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:50 Heat of formation + Delta-G solvation = -22.129060 kcal Electronic energy + Delta-G solvation = -15080.133299 eV Core-core repulsion = 12790.860785 eV Total energy + Delta-G solvation = -2289.272514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.64844 -36.88402 -34.68182 -32.89357 -31.65694 -29.00399 -28.36330 -26.25128 -25.13845 -23.12095 -20.65282 -19.85431 -18.68994 -17.30397 -16.56954 -16.50832 -16.41082 -15.16949 -14.99695 -14.91889 -14.08639 -13.94310 -13.54261 -13.38727 -13.24758 -12.79772 -12.76166 -12.53660 -12.35118 -12.19379 -11.90353 -11.68497 -11.59461 -11.56154 -11.28247 -11.14713 -10.47280 -9.45479 -9.08850 -8.15346 -6.25982 1.38535 1.41263 1.48886 2.41261 3.15842 3.20851 3.65839 3.72621 3.85702 4.15847 4.32990 4.44576 4.55082 4.67558 4.68757 4.73869 4.80386 4.91421 4.96577 5.06079 5.12408 5.16876 5.24120 5.28586 5.38646 5.50848 5.57293 5.67731 5.79261 6.12717 6.14615 6.38788 6.40993 6.69009 6.90168 7.41221 8.94791 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036650 B = 0.008838 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.799351 B = 3167.358497 C = 3467.600654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.076 3.924 3 H 0.061 0.939 4 C 0.017 3.983 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.509 5.509 14 C 0.032 3.968 15 C -0.082 4.082 16 H 0.094 0.906 17 C -0.134 4.134 18 C 0.089 3.911 19 H 0.060 0.940 20 N -0.852 5.852 21 C 0.032 3.968 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.052 0.948 25 H -0.011 1.011 26 H -0.003 1.003 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.343 0.657 34 H 0.350 0.650 35 H 0.039 0.961 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -2.543 -12.244 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 H 0.079 0.921 4 C -0.021 4.021 5 C -0.573 4.573 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.232 5.232 14 C -0.096 4.096 15 C -0.101 4.101 16 H 0.112 0.888 17 C -0.192 4.192 18 C -0.023 4.023 19 H 0.078 0.922 20 N -0.386 5.386 21 C -0.097 4.097 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.007 0.993 26 H 0.015 0.985 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.057 0.943 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.960 -1.754 -12.086 12.251 hybrid contribution -0.111 -0.793 1.275 1.506 sum 0.850 -2.548 -10.812 11.140 Atomic orbital electron populations 1.21580 0.93959 1.00945 1.01087 1.21736 0.96149 0.97081 0.88297 0.92124 1.19456 0.94356 0.95114 0.93212 1.21557 1.38787 1.04865 0.92059 0.92306 1.25919 0.95259 0.95965 1.02492 1.70126 1.43442 1.19308 1.23977 0.85602 0.79073 0.78683 0.78298 1.19146 1.21016 1.19385 1.65151 1.07718 1.13533 1.36822 1.23344 0.88810 0.99038 0.98424 1.22114 0.95071 0.93890 0.99040 0.88776 1.21604 0.94944 1.00873 1.01780 1.22118 0.94211 0.92674 0.93257 0.92204 1.58742 1.12787 1.19446 1.47637 1.22995 0.98001 0.88742 0.99945 0.91640 0.94006 0.92942 0.99313 0.98476 0.93081 0.90589 0.95047 0.90899 0.92144 0.93373 0.84394 0.83432 0.94299 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.92 71.98 0.64 -4.02 16 2 C 0.08 3.33 2.48 44.92 0.11 3.44 16 3 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.02 0.90 3.81 29.85 0.11 1.01 16 5 C -0.53 -30.88 8.31 25.60 0.21 -30.67 16 6 H 0.06 3.27 7.28 -2.91 -0.02 3.24 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 9 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.51 -19.28 5.32 -857.88 -4.56 -23.85 16 14 C 0.03 1.15 5.83 86.65 0.51 1.66 16 15 C -0.08 -2.28 3.63 -9.59 -0.03 -2.32 16 16 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.13 -3.31 8.03 71.98 0.58 -2.73 16 18 C 0.09 2.54 4.04 45.79 0.19 2.73 16 19 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 20 N -0.85 -24.45 8.23 -165.05 -1.36 -25.81 16 21 C 0.03 1.12 4.97 86.45 0.43 1.55 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.04 1.64 7.09 -2.39 -0.02 1.62 16 24 H 0.05 2.17 7.08 -2.39 -0.02 2.16 16 25 H -0.01 -0.67 5.78 -2.39 -0.01 -0.68 16 26 H 0.00 -0.18 6.18 -2.39 -0.01 -0.19 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.03 1.40 5.39 -2.39 -0.01 1.39 16 30 H 0.07 1.40 7.71 -2.39 -0.02 1.38 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.45 7.32 -2.39 -0.02 1.43 16 33 H 0.34 9.21 9.06 -89.69 -0.81 8.40 16 34 H 0.35 8.15 7.29 -89.69 -0.65 7.49 16 35 H 0.04 1.67 5.15 -2.38 -0.01 1.66 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -65.84 273.83 -0.80 -66.64 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.40 Total: 22.06 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 3.21 Total: -28.80 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -5.64 Total: -107.13 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.84 -0.80 -66.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695784321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.514 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds