Wall clock time and date at job start Mon Mar 30 2020 20:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99813 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46667 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46991 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.82427 * 305.55879 * 14 13 12 16 16 C 1.54383 * 109.82637 * 184.58543 * 14 13 12 17 17 C 1.55306 * 102.25278 * 219.12467 * 16 14 13 18 18 C 1.54946 * 100.94069 * 34.13606 * 17 16 14 19 19 O 1.43229 * 109.83524 * 66.45089 * 14 13 12 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 22 22 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 23 23 H 1.00905 * 110.99587 * 303.95108 * 10 9 7 24 24 H 1.08992 * 109.47342 * 299.99705 * 11 10 9 25 25 H 1.09001 * 109.47206 * 59.99833 * 11 10 9 26 26 H 1.09000 * 109.47168 * 299.99840 * 12 11 10 27 27 H 1.09001 * 109.47120 * 60.00177 * 12 11 10 28 28 H 1.09000 * 109.46810 * 299.99785 * 13 12 11 29 29 H 1.08993 * 109.47426 * 59.99714 * 13 12 11 30 30 H 1.08994 * 110.85080 * 337.31653 * 16 14 13 31 31 H 1.09004 * 110.84867 * 100.93849 * 16 14 13 32 32 H 1.09005 * 111.12799 * 276.22002 * 17 16 14 33 33 H 1.08997 * 111.16494 * 152.07130 * 17 16 14 34 34 H 1.09003 * 110.31086 * 204.64434 * 18 17 16 35 35 H 1.09003 * 110.31250 * 82.46784 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 6 2.5299 -6.0431 -0.0006 13 6 1.8005 -7.3880 -0.0006 14 6 2.8253 -8.5240 -0.0006 15 1 3.5157 -8.3990 -0.8348 16 6 2.1012 -9.8826 -0.1167 17 6 2.9273 -10.7796 0.8450 18 6 3.3195 -9.7548 1.9389 19 8 3.5506 -8.5243 1.2345 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 0.8898 22 1 0.6239 -2.5567 -0.8903 23 1 2.8403 -3.5488 -0.7820 24 1 0.8805 -4.9812 0.8902 25 1 0.8798 -4.9817 -0.8897 26 1 3.1541 -5.9687 -0.8910 27 1 3.1554 -5.9686 0.8890 28 1 1.1760 -7.4626 0.8897 29 1 1.1752 -7.4623 -0.8902 30 1 1.0678 -9.8014 0.2202 31 1 2.1489 -10.2616 -1.1376 32 1 3.8104 -11.1802 0.3473 33 1 2.3152 -11.5809 1.2588 34 1 4.2281 -10.0749 2.4490 35 1 2.5056 -9.6343 2.6539 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308178564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:47 Heat of formation + Delta-G solvation = -70.352333 kcal Electronic energy + Delta-G solvation = -13849.521516 eV Core-core repulsion = 11460.439223 eV Total energy + Delta-G solvation = -2389.082294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60510 -35.93252 -33.47310 -32.30999 -31.93109 -29.06106 -26.51681 -24.28571 -22.15407 -21.49486 -20.86597 -20.49040 -17.07720 -16.38439 -16.04007 -15.11970 -14.65763 -14.57041 -13.78988 -13.74650 -13.23586 -13.04310 -12.53919 -12.15396 -11.93197 -11.60702 -11.49911 -11.24123 -11.01566 -10.91118 -10.85271 -10.62350 -10.40996 -10.21936 -9.79865 -9.51679 -9.10318 -8.43045 -7.19751 -5.98663 -4.00332 3.35805 3.40972 3.45356 3.73952 4.30931 4.46441 4.56181 4.67948 4.97894 5.03522 5.25422 5.29644 5.37112 5.42880 5.46884 5.53235 5.59252 5.70254 5.82626 5.87565 6.01883 6.13498 6.17384 6.29720 6.65454 6.76921 7.00553 7.33069 7.48845 7.84638 8.19157 8.48513 8.70033 9.09471 9.64386 11.12618 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.085519 B = 0.004151 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.332753 B = 6743.076841 C = 6891.938788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.192 3.808 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.112 4.112 13 C -0.127 4.127 14 C 0.081 3.919 15 H 0.079 0.921 16 C -0.153 4.153 17 C -0.158 4.158 18 C 0.049 3.951 19 O -0.373 6.373 20 H 0.261 0.739 21 H 0.027 0.973 22 H -0.015 1.015 23 H 0.327 0.673 24 H 0.061 0.939 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -20.659 -0.172 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.165 4.165 14 C 0.023 3.977 15 H 0.097 0.903 16 C -0.190 4.190 17 C -0.195 4.195 18 C -0.028 4.028 19 O -0.293 6.293 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.003 0.997 23 H 0.143 0.857 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.971 -20.343 0.585 20.736 hybrid contribution -0.213 0.702 -0.970 1.216 sum 3.758 -19.642 -0.385 20.002 Atomic orbital electron populations 1.69973 1.06102 1.26715 1.51117 1.25007 0.94893 0.99396 0.95405 0.86466 0.79670 0.82941 0.78127 1.20606 1.19828 1.21331 1.21222 0.93557 0.90307 1.50083 0.91940 1.19556 0.90670 0.87523 0.95676 1.60642 1.21248 1.01449 1.48845 1.21890 0.95404 0.90413 0.99348 1.21512 0.98350 0.92545 1.02549 1.21950 0.97566 0.94754 1.02261 1.22806 0.93269 0.94322 0.87292 0.90342 1.23206 1.00219 0.94921 1.00685 1.23266 1.00553 0.98541 0.97173 1.23357 1.00927 0.83858 0.94633 1.88492 1.69855 1.37618 1.33326 0.92963 0.95506 0.99706 0.85668 0.92083 0.96819 0.92720 0.90690 0.91546 0.91294 0.90329 0.90170 0.90528 0.90156 0.89982 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -15.15 9.32 -34.44 -0.32 -15.47 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.33 5.44 -4.98 -0.03 5.30 16 10 N -0.69 -15.94 6.49 -115.06 -0.75 -16.69 16 11 C 0.06 1.13 5.69 -3.82 -0.02 1.11 16 12 C -0.11 -1.74 5.38 -26.73 -0.14 -1.89 16 13 C -0.13 -1.60 4.78 -26.73 -0.13 -1.73 16 14 C 0.08 0.91 3.52 -26.01 -0.09 0.82 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.15 -1.29 6.54 -24.78 -0.16 -1.46 16 17 C -0.16 -1.20 7.16 -24.48 -0.18 -1.37 16 18 C 0.05 0.47 7.78 38.18 0.30 0.76 16 19 O -0.37 -4.91 10.63 -35.23 -0.37 -5.29 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 22 H -0.01 -0.43 8.14 -51.93 -0.42 -0.85 16 23 H 0.33 7.16 8.72 -39.29 -0.34 6.82 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.29 7.88 -51.93 -0.41 0.88 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.64 7.85 -51.93 -0.41 0.24 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -31.84 288.76 -8.13 -39.96 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.20 Total: -0.24 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.87 Total: -12.42 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.01 Total: -43.58 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.37 Total: -5.29 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.84 -8.13 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.389 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds