Wall clock time and date at job start Mon Mar 30 2020 20:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99813 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46667 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46991 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.82427 * 305.55879 * 14 13 12 16 16 C 1.54383 * 109.82637 * 184.58543 * 14 13 12 17 17 C 1.55306 * 102.25278 * 219.12467 * 16 14 13 18 18 C 1.54946 * 100.94069 * 34.13606 * 17 16 14 19 19 O 1.43229 * 109.83524 * 66.45089 * 14 13 12 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 22 22 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 23 23 H 1.00905 * 110.99587 * 303.95108 * 10 9 7 24 24 H 1.08992 * 109.47342 * 299.99705 * 11 10 9 25 25 H 1.09001 * 109.47206 * 59.99833 * 11 10 9 26 26 H 1.09000 * 109.47168 * 299.99840 * 12 11 10 27 27 H 1.09001 * 109.47120 * 60.00177 * 12 11 10 28 28 H 1.09000 * 109.46810 * 299.99785 * 13 12 11 29 29 H 1.08993 * 109.47426 * 59.99714 * 13 12 11 30 30 H 1.08994 * 110.85080 * 337.31653 * 16 14 13 31 31 H 1.09004 * 110.84867 * 100.93849 * 16 14 13 32 32 H 1.09005 * 111.12799 * 276.22002 * 17 16 14 33 33 H 1.08997 * 111.16494 * 152.07130 * 17 16 14 34 34 H 1.09003 * 110.31086 * 204.64434 * 18 17 16 35 35 H 1.09003 * 110.31250 * 82.46784 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 6 2.5299 -6.0431 -0.0006 13 6 1.8005 -7.3880 -0.0006 14 6 2.8253 -8.5240 -0.0006 15 1 3.5157 -8.3990 -0.8348 16 6 2.1012 -9.8826 -0.1167 17 6 2.9273 -10.7796 0.8450 18 6 3.3195 -9.7548 1.9389 19 8 3.5506 -8.5243 1.2345 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5570 0.8898 22 1 0.6239 -2.5567 -0.8903 23 1 2.8403 -3.5488 -0.7820 24 1 0.8805 -4.9812 0.8902 25 1 0.8798 -4.9817 -0.8897 26 1 3.1541 -5.9687 -0.8910 27 1 3.1554 -5.9686 0.8890 28 1 1.1760 -7.4626 0.8897 29 1 1.1752 -7.4623 -0.8902 30 1 1.0678 -9.8014 0.2202 31 1 2.1489 -10.2616 -1.1376 32 1 3.8104 -11.1802 0.3473 33 1 2.3152 -11.5809 1.2588 34 1 4.2281 -10.0749 2.4490 35 1 2.5056 -9.6343 2.6539 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308178564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:47 Heat of formation + Delta-G solvation = -92.338337 kcal Electronic energy + Delta-G solvation = -13850.474901 eV Core-core repulsion = 11460.439223 eV Total energy + Delta-G solvation = -2390.035678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42869 -37.63182 -35.22624 -33.82866 -32.95258 -30.40638 -28.24541 -25.71425 -23.58058 -22.92270 -22.05340 -21.54614 -18.56631 -17.90295 -16.95166 -16.78679 -16.47321 -15.73750 -15.20015 -14.92244 -14.64577 -14.20335 -13.99543 -13.78072 -13.29014 -12.89140 -12.68658 -12.65569 -12.58969 -12.26200 -12.12150 -12.02696 -11.67584 -11.60387 -11.48892 -11.16360 -10.67576 -10.40634 -9.14222 -8.24214 -6.36199 1.40688 1.43418 1.54755 2.39609 2.97779 3.08660 3.48560 3.64392 3.86529 4.02134 4.12755 4.21852 4.33293 4.39804 4.49999 4.65005 4.73488 4.84614 4.85595 4.94097 4.95952 5.02768 5.04816 5.07353 5.23957 5.24803 5.41023 5.43653 5.60981 6.00140 6.19852 6.43468 6.71052 6.87289 7.34967 8.87724 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.085519 B = 0.004151 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.332753 B = 6743.076841 C = 6891.938788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.694 5.694 11 C 0.060 3.940 12 C -0.099 4.099 13 C -0.121 4.121 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.149 4.149 17 C -0.149 4.149 18 C 0.038 3.962 19 O -0.406 6.406 20 H 0.266 0.734 21 H -0.003 1.003 22 H -0.038 1.038 23 H 0.335 0.665 24 H 0.051 0.949 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -21.413 -0.646 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.325 5.325 11 C -0.070 4.070 12 C -0.137 4.137 13 C -0.160 4.160 14 C 0.019 3.981 15 H 0.099 0.901 16 C -0.186 4.186 17 C -0.187 4.187 18 C -0.038 4.038 19 O -0.326 6.326 20 H 0.075 0.925 21 H 0.015 0.985 22 H -0.020 1.020 23 H 0.152 0.848 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.826 -21.130 0.111 21.674 hybrid contribution -0.501 0.890 -0.796 1.295 sum 4.326 -20.240 -0.686 20.708 Atomic orbital electron populations 1.70100 1.07888 1.28119 1.51402 1.26021 0.95869 1.03587 0.94403 0.85260 0.78490 0.77576 0.78522 1.19804 1.18624 1.20433 1.21565 0.93856 0.91449 1.50881 0.91723 1.19229 0.90718 0.89122 0.93119 1.60536 1.20696 1.01882 1.49343 1.21980 0.96249 0.89661 0.99064 1.21380 0.97376 0.92843 1.02064 1.21914 0.97837 0.93467 1.02747 1.22868 0.93080 0.95272 0.86897 0.90144 1.23201 1.00093 0.93300 1.02012 1.23257 1.00998 0.98266 0.96155 1.23576 1.01557 0.83474 0.95233 1.88459 1.70379 1.39567 1.34221 0.92513 0.98458 1.02047 0.84779 0.93070 0.96275 0.91816 0.92492 0.92093 0.89758 0.90025 0.88442 0.89798 0.88205 0.89063 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -32.19 9.32 25.60 0.24 -31.96 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.74 5.44 85.55 0.47 12.21 16 10 N -0.69 -32.46 6.49 -517.94 -3.36 -35.82 16 11 C 0.06 2.30 5.69 86.30 0.49 2.79 16 12 C -0.10 -3.04 5.38 30.60 0.16 -2.87 16 13 C -0.12 -2.92 4.78 30.60 0.15 -2.78 16 14 C 0.08 1.61 3.52 31.06 0.11 1.72 16 15 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 16 C -0.15 -2.15 6.54 31.86 0.21 -1.94 16 17 C -0.15 -1.89 7.16 32.05 0.23 -1.66 16 18 C 0.04 0.67 7.78 72.65 0.56 1.24 16 19 O -0.41 -10.38 10.63 -148.98 -1.58 -11.97 16 20 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 21 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 22 H -0.04 -2.30 8.14 -2.39 -0.02 -2.32 16 23 H 0.34 14.71 8.72 -89.69 -0.78 13.93 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.97 7.88 -2.39 -0.02 1.95 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.14 7.85 -2.39 -0.02 1.12 16 31 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.45 288.76 0.70 -67.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.25 Total: 13.25 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.08 Total: -22.84 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -3.08 Total: -93.59 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.58 Total: -11.97 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.45 0.70 -67.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.592 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds