Wall clock time and date at job start Mon Mar 30 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50758 * 2 1 4 4 C 1.53098 * 109.54074 * 239.88968 * 2 1 3 5 5 N 1.47016 * 109.25721 * 183.19574 * 4 2 1 6 6 C 1.46903 * 111.00220 * 182.39206 * 5 4 2 7 7 C 1.53008 * 109.46681 * 66.36260 * 6 5 4 8 8 C 1.50703 * 109.46726 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99792 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00118 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99714 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47586 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47077 * 120.00230 * 12 10 8 15 15 H 1.48498 * 109.46935 * 239.99655 * 12 10 8 16 16 C 1.47012 * 110.75072 * 58.61755 * 5 4 2 17 17 C 1.53094 * 109.25795 * 301.38161 * 16 5 4 18 18 H 1.09004 * 109.50663 * 176.78601 * 17 16 5 19 19 C 1.53005 * 109.54470 * 296.89630 * 17 16 5 20 20 O 1.43011 * 109.25780 * 56.85277 * 17 16 5 21 21 H 1.09003 * 109.47341 * 300.00097 * 1 2 3 22 22 H 1.09001 * 109.47035 * 59.99971 * 1 2 3 23 23 H 1.09002 * 109.47693 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50862 * 303.12705 * 4 2 1 25 25 H 1.09003 * 109.50840 * 63.26440 * 4 2 1 26 26 H 1.08997 * 109.47487 * 186.36337 * 6 5 4 27 27 H 1.09002 * 109.46714 * 306.36764 * 6 5 4 28 28 H 1.08997 * 109.47223 * 300.00239 * 7 6 5 29 29 H 1.09002 * 109.47135 * 60.00762 * 7 6 5 30 30 H 0.97003 * 119.99932 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.50656 * 181.44976 * 16 5 4 32 32 H 1.08994 * 109.54815 * 61.34408 * 16 5 4 33 33 H 1.08996 * 109.47382 * 179.80700 * 19 17 16 34 34 H 1.08999 * 109.46713 * 299.80271 * 19 17 16 35 35 H 1.08995 * 109.47116 * 59.79989 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2481 5 7 3.5101 -0.7874 -1.2036 6 6 4.0464 -1.4258 -2.4132 7 6 3.7639 -0.5374 -3.6265 8 6 4.3145 -1.1919 -4.8673 9 1 4.8154 -2.1462 -4.7975 10 6 4.1789 -0.5724 -6.0915 11 7 3.5694 0.5899 -6.1764 12 14 4.8608 -1.3840 -7.6296 13 1 5.4962 -2.6763 -7.2673 14 1 3.7563 -1.6275 -8.5920 15 1 5.8725 -0.4930 -8.2524 16 6 3.9647 -1.4870 0.0069 17 6 3.4334 -0.7555 1.2423 18 1 3.7200 -1.3026 2.1405 19 6 4.0219 0.6559 1.2941 20 8 2.0075 -0.6758 1.1664 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6347 -1.7344 -1.2757 25 1 1.7282 -0.1797 -2.1389 26 1 5.1224 -1.5623 -2.3055 27 1 3.5693 -2.3956 -2.5541 28 1 2.6879 -0.4008 -3.7342 29 1 4.2410 0.4325 -3.4856 30 1 3.4743 1.0259 -7.0377 31 1 5.0544 -1.4999 0.0322 32 1 3.5887 -2.5100 -0.0002 33 1 3.6402 1.1767 2.1722 34 1 5.1086 0.5944 1.3520 35 1 3.7363 1.2018 0.3951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019438279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:00 Heat of formation + Delta-G solvation = -56.121101 kcal Electronic energy + Delta-G solvation = -14865.116400 eV Core-core repulsion = 12476.651219 eV Total energy + Delta-G solvation = -2388.465181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.65864 -35.74062 -33.22127 -32.91525 -30.51669 -29.03749 -26.60568 -25.39342 -23.20250 -22.20371 -20.16962 -19.15132 -16.61857 -16.17812 -15.70323 -15.07699 -14.65557 -14.38182 -14.08875 -13.45389 -12.99567 -12.59686 -12.27537 -12.15655 -11.99524 -11.75747 -11.38480 -11.35763 -11.06077 -10.94373 -10.77731 -10.54568 -10.11012 -9.88711 -9.54219 -9.15128 -9.07875 -8.34903 -7.76392 -6.01242 -4.03626 3.30144 3.37609 3.41604 3.91605 4.32118 4.50875 5.04255 5.10661 5.25006 5.30402 5.34852 5.43653 5.57005 5.63803 5.75920 5.81397 5.91445 6.02465 6.08427 6.15002 6.24321 6.31038 6.38659 6.46335 6.53221 6.93607 7.40787 7.44184 7.52168 7.76365 7.86861 8.05459 8.41713 9.03585 9.60197 11.10137 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046703 B = 0.006811 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.395205 B = 4109.713366 C = 4388.268613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.534 5.534 6 C 0.063 3.937 7 C 0.029 3.971 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.022 3.978 17 C 0.091 3.909 18 H 0.097 0.903 19 C -0.174 4.174 20 O -0.384 6.384 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 -1.323 13.033 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.086 0.914 4 C -0.103 4.103 5 N -0.259 5.259 6 C -0.064 4.064 7 C -0.009 4.009 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.107 4.107 17 C 0.033 3.967 18 H 0.115 0.885 19 C -0.232 4.232 20 O -0.303 6.303 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.446 -0.790 13.060 13.310 hybrid contribution 0.316 -1.180 -1.214 1.722 sum -2.129 -1.970 11.845 12.195 Atomic orbital electron populations 1.21735 0.93293 1.02646 1.02355 1.22194 0.94306 0.96127 0.84616 0.91396 1.22810 0.88666 0.99738 0.99104 1.62320 1.08290 1.52840 1.02433 1.22364 0.98335 0.96192 0.89502 1.19090 0.97048 0.95101 0.89632 1.21230 1.37022 1.05646 0.92191 0.92761 1.24990 0.95339 0.94922 0.99054 1.69980 1.42862 1.15536 1.24819 0.86539 0.78771 0.79491 0.83215 1.19792 1.21014 1.20963 1.22747 1.00744 0.95709 0.91473 1.22205 0.80880 0.96356 0.97217 0.88500 1.22268 1.01062 0.97213 1.02636 1.87961 1.20769 1.78405 1.43201 0.92048 0.90807 0.92152 0.94778 0.88732 0.92005 0.96180 0.96538 0.95717 0.93044 0.90162 0.94816 0.92878 0.91913 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.16 0.36 -1.44 16 2 C 0.09 1.29 3.02 -26.68 -0.08 1.21 16 3 H 0.07 1.04 6.49 -51.93 -0.34 0.70 16 4 C 0.03 0.44 4.72 -3.71 -0.02 0.43 16 5 N -0.53 -9.95 4.10 -234.30 -0.96 -10.91 16 6 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 7 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 8 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 9 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 12 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 C 0.02 0.34 5.06 -3.71 -0.02 0.32 16 17 C 0.09 1.27 3.92 -26.68 -0.10 1.16 16 18 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.17 -2.28 8.89 37.16 0.33 -1.95 16 20 O -0.38 -5.94 10.28 -35.23 -0.36 -6.31 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.81 6.38 -51.93 -0.33 1.48 16 26 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 27 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.02 0.45 6.52 -51.93 -0.34 0.11 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.14 6.13 -51.93 -0.32 0.82 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -30.14 277.17 -7.46 -37.60 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.93 Total: -3.23 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.10 Total: -11.92 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.22 Total: -36.99 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.36 Total: -6.31 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.14 -7.46 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019438279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.518 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds