Wall clock time and date at job start Mon Mar 30 2020 20:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99444 * 2 1 4 4 C 1.53124 * 109.52202 * 90.32072 * 3 2 1 5 5 C 1.53039 * 109.27498 * 177.55452 * 4 3 2 6 6 N 1.46843 * 109.52391 * 300.81655 * 5 4 3 7 7 C 1.46901 * 111.00022 * 185.84211 * 6 5 4 8 8 H 1.09000 * 109.47018 * 185.79312 * 7 6 5 9 9 C 1.53004 * 109.47031 * 305.78980 * 7 6 5 10 10 C 1.50697 * 109.46966 * 65.79105 * 7 6 5 11 11 H 1.07997 * 120.00003 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99500 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00684 * 0.02562 * 12 10 7 14 14 Si 1.86807 * 119.99875 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46767 * 90.00038 * 14 12 10 16 16 H 1.48500 * 109.47325 * 210.00503 * 14 12 10 17 17 H 1.48510 * 109.46917 * 330.00399 * 14 12 10 18 18 C 1.46854 * 111.19690 * 61.74512 * 6 5 4 19 19 C 1.53029 * 109.52283 * 298.25524 * 18 6 5 20 20 H 1.09000 * 109.47274 * 300.00030 * 1 2 3 21 21 H 1.08999 * 109.47287 * 60.00052 * 1 2 3 22 22 H 1.09001 * 109.46763 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.57645 * 330.15587 * 3 2 1 24 24 H 1.08997 * 109.50088 * 297.49360 * 4 3 2 25 25 H 1.09004 * 109.50324 * 57.61534 * 4 3 2 26 26 H 1.09001 * 109.45805 * 180.80724 * 5 4 3 27 27 H 1.08997 * 109.46104 * 60.83468 * 5 4 3 28 28 H 1.09000 * 109.46948 * 60.00289 * 9 7 6 29 29 H 1.08994 * 109.47144 * 179.97438 * 9 7 6 30 30 H 1.09001 * 109.47370 * 300.00481 * 9 7 6 31 31 H 0.96992 * 120.00614 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.45788 * 178.23958 * 18 6 5 33 33 H 1.09003 * 109.45264 * 58.26841 * 18 6 5 34 34 H 1.08994 * 109.50822 * 299.23828 * 19 18 6 35 35 H 1.09001 * 109.50199 * 179.11868 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.2256 1.7697 1.4432 5 6 2.9037 3.1417 1.4367 6 7 4.1909 3.0496 0.7359 7 6 4.9331 4.3138 0.8299 8 1 5.8331 4.2531 0.2181 9 6 4.0525 5.4606 0.3293 10 6 5.3173 4.5652 2.2652 11 1 5.0385 3.8565 3.0309 12 6 6.0258 5.6995 2.6006 13 7 6.3658 6.5623 1.6681 14 14 6.5016 6.0115 4.3799 15 1 7.8287 5.4031 4.6514 16 1 6.5681 7.4746 4.6253 17 1 5.4859 5.4048 5.2776 18 6 4.0053 2.6512 -0.6653 19 6 3.3601 1.2647 -0.7216 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.3449 2.0014 -0.5111 24 1 1.2632 1.8419 1.9497 25 1 2.8595 1.0529 1.9652 26 1 3.0715 3.4686 2.4629 27 1 2.2631 3.8610 0.9266 28 1 3.1525 5.5213 0.9411 29 1 4.6031 6.3986 0.3994 30 1 3.7745 5.2787 -0.7089 31 1 6.8639 7.3604 1.9041 32 1 4.9731 2.6220 -1.1658 33 1 3.3594 3.3729 -1.1654 34 1 4.0118 0.5399 -0.2336 35 1 3.2082 0.9760 -1.7616 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:35 Heat of formation + Delta-G solvation = -49.451133 kcal Electronic energy + Delta-G solvation = -15041.661575 eV Core-core repulsion = 12653.485625 eV Total energy + Delta-G solvation = -2388.175950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02821 -37.00930 -33.66324 -31.49762 -30.34932 -28.07145 -26.38032 -25.22221 -23.13016 -22.49758 -20.41718 -18.81521 -16.44282 -16.14840 -15.41096 -14.98806 -14.81917 -14.17659 -13.86478 -13.20953 -13.08243 -12.84983 -12.18338 -11.86527 -11.70815 -11.41118 -11.06905 -10.94864 -10.84315 -10.61028 -10.46387 -10.39512 -10.11817 -9.99181 -9.64623 -9.22407 -8.85248 -8.36435 -7.11952 -5.99471 -4.03037 3.32529 3.38721 3.42208 3.91126 4.42690 4.93621 5.14641 5.20554 5.32480 5.36279 5.39645 5.49659 5.62431 5.75693 5.91468 5.97610 6.07160 6.25020 6.27729 6.43076 6.55884 6.64833 6.74124 6.82422 6.87294 7.14698 7.38655 7.49704 7.72564 7.86451 8.16652 8.40397 8.62280 9.03285 9.62078 11.07672 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052093 B = 0.007527 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.368025 B = 3719.252103 C = 3985.583269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.090 3.910 4 C -0.137 4.137 5 C 0.066 3.934 6 N -0.531 5.531 7 C 0.210 3.790 8 H 0.039 0.961 9 C -0.172 4.172 10 C -0.498 4.498 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.057 3.943 19 C -0.109 4.109 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.023 0.977 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -7.748 -3.508 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.032 3.968 4 C -0.175 4.175 5 C -0.063 4.063 6 N -0.255 5.255 7 C 0.104 3.896 8 H 0.057 0.943 9 C -0.231 4.231 10 C -0.537 4.537 11 H 0.081 0.919 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.072 4.072 19 C -0.147 4.147 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.699 -8.099 -3.294 12.334 hybrid contribution -0.465 1.181 0.513 1.369 sum -9.164 -6.919 -2.781 11.814 Atomic orbital electron populations 1.22714 0.81927 1.02101 0.99704 1.87901 1.18960 1.28771 1.95139 1.22272 0.94723 0.83386 0.96398 1.22134 1.00123 0.99002 0.96235 1.21889 0.90164 0.93450 1.00755 1.62266 1.17626 1.35248 1.10388 1.19302 0.91452 0.81632 0.97186 0.94281 1.22403 1.00036 1.05155 0.95486 1.21119 1.34263 1.05550 0.92728 0.91943 1.24931 0.95961 0.96056 0.97382 1.69881 1.39536 1.11790 1.32296 0.86526 0.78941 0.77074 0.85011 1.20686 1.21412 1.19970 1.21969 0.99500 0.93887 0.91861 1.21653 0.94937 0.98766 0.99387 0.94256 0.94468 0.90125 0.92963 0.92614 0.90614 0.89660 0.95845 0.95131 0.89358 0.97457 0.93038 0.90952 0.95768 0.90514 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.39 -5.84 10.35 -35.23 -0.36 -6.20 16 3 C 0.09 1.39 2.68 -26.60 -0.07 1.32 16 4 C -0.14 -2.27 5.72 -26.65 -0.15 -2.43 16 5 C 0.07 1.30 4.55 -3.83 -0.02 1.28 16 6 N -0.53 -11.47 4.60 -228.08 -1.05 -12.52 16 7 C 0.21 5.29 2.31 -68.86 -0.16 5.13 16 8 H 0.04 1.08 7.99 -51.93 -0.41 0.66 16 9 C -0.17 -4.15 8.23 37.16 0.31 -3.84 16 10 C -0.50 -13.62 7.88 -34.44 -0.27 -13.89 16 11 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 12 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 13 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.06 1.04 5.13 -3.83 -0.02 1.03 16 19 C -0.11 -1.75 5.75 -26.65 -0.15 -1.91 16 20 H 0.04 0.41 7.96 -51.93 -0.41 0.00 16 21 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 24 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.09 1.82 6.70 -51.93 -0.35 1.48 16 27 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 28 H 0.03 0.71 6.46 -51.93 -0.34 0.37 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.01 0.14 6.81 -51.93 -0.35 -0.21 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 33 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 270.78 15.07 4.08 4.08 Total: -1.00 -28.45 270.78 -7.00 -35.45 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.73 Total: -1.94 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 0.46 Total: -10.36 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.42 Total: -37.38 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.36 Total: -6.20 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.45 -7.00 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.003 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds