Wall clock time and date at job start Mon Mar 30 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99990 * 2 1 4 4 C 1.53122 * 109.52487 * 150.00315 * 3 2 1 5 5 C 1.53034 * 109.27931 * 177.56251 * 4 3 2 6 6 N 1.46855 * 109.52267 * 300.81719 * 5 4 3 7 7 C 1.46894 * 111.00195 * 185.84020 * 6 5 4 8 8 H 1.09005 * 109.46811 * 54.99897 * 7 6 5 9 9 C 1.52997 * 109.47465 * 295.00261 * 7 6 5 10 10 C 1.50696 * 109.47294 * 174.99907 * 7 6 5 11 11 H 1.08004 * 119.99879 * 95.26248 * 10 7 6 12 12 C 1.37877 * 120.00357 * 275.26213 * 10 7 6 13 13 N 1.31518 * 119.99637 * 355.15314 * 12 10 7 14 14 Si 1.86792 * 120.00222 * 175.14731 * 12 10 7 15 15 H 1.48504 * 109.47249 * 90.00395 * 14 12 10 16 16 H 1.48504 * 109.47071 * 210.00086 * 14 12 10 17 17 H 1.48498 * 109.47345 * 330.00297 * 14 12 10 18 18 C 1.46849 * 111.19683 * 61.74400 * 6 5 4 19 19 C 1.53043 * 109.52165 * 298.25946 * 18 6 5 20 20 H 1.09000 * 109.47055 * 299.99567 * 1 2 3 21 21 H 1.08999 * 109.47442 * 59.99801 * 1 2 3 22 22 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.57708 * 29.84027 * 3 2 1 24 24 H 1.08998 * 109.50403 * 57.61453 * 4 3 2 25 25 H 1.09007 * 109.50060 * 297.50166 * 4 3 2 26 26 H 1.09003 * 109.46263 * 180.80605 * 5 4 3 27 27 H 1.08997 * 109.46748 * 60.83664 * 5 4 3 28 28 H 1.08999 * 109.47426 * 175.02080 * 9 7 6 29 29 H 1.09002 * 109.47282 * 295.02628 * 9 7 6 30 30 H 1.09006 * 109.47045 * 55.02088 * 9 7 6 31 31 H 0.97000 * 120.00074 * 5.11979 * 13 12 10 32 32 H 1.08995 * 109.46167 * 58.27419 * 18 6 5 33 33 H 1.08997 * 109.46015 * 178.24310 * 18 6 5 34 34 H 1.08997 * 109.50016 * 299.23516 * 19 18 6 35 35 H 1.08997 * 109.50019 * 179.12196 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3602 1.2646 0.7215 5 6 4.0053 2.6511 0.6652 6 7 4.1909 3.0496 -0.7360 7 6 4.9330 4.3138 -0.8300 8 1 5.8759 4.2225 -0.2907 9 6 4.1009 5.4407 -0.2148 10 6 5.2105 4.6270 -2.2777 11 1 4.5467 5.2790 -2.8260 12 6 6.3118 4.0811 -2.9023 13 7 7.1719 3.3650 -2.2116 14 14 6.5822 4.3585 -4.7296 15 1 7.3889 5.5893 -4.9295 16 1 7.3034 3.1951 -5.3056 17 1 5.2695 4.5118 -5.4067 18 6 2.9037 3.1417 -1.4367 19 6 2.2256 1.7697 -1.4431 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.3449 2.0014 0.5110 24 1 4.0118 0.5398 0.2335 25 1 3.2083 0.9758 1.7616 26 1 4.9732 2.6219 1.1657 27 1 3.3596 3.3728 1.1656 28 1 4.6859 6.3603 -0.2043 29 1 3.1984 5.5910 -0.8073 30 1 3.8254 5.1736 0.8055 31 1 6.9939 3.1584 -1.2807 32 1 2.2631 3.8610 -0.9266 33 1 3.0714 3.4687 -2.4629 34 1 2.8594 1.0530 -1.9653 35 1 1.2632 1.8418 -1.9497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:37 Heat of formation + Delta-G solvation = -54.382800 kcal Electronic energy + Delta-G solvation = -15198.900130 eV Core-core repulsion = 12810.510327 eV Total energy + Delta-G solvation = -2388.389803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99923 -37.02905 -33.69300 -31.41949 -30.28917 -28.41718 -26.41646 -24.63889 -23.13144 -22.37744 -20.60142 -18.93801 -16.66068 -16.36800 -15.27791 -14.99168 -14.48889 -14.05700 -13.71888 -13.45104 -13.22661 -12.92238 -12.38011 -11.97147 -11.54983 -11.44707 -11.19343 -11.12011 -10.74988 -10.71889 -10.39560 -10.23036 -10.08598 -9.95376 -9.66969 -9.15781 -8.57926 -8.23726 -7.04339 -6.27985 -4.02476 3.45858 3.50625 3.65870 3.94818 4.56871 4.90023 5.14466 5.23493 5.37602 5.41706 5.52019 5.64323 5.65252 5.78942 5.93012 6.00854 6.10246 6.22338 6.28715 6.31192 6.37480 6.48258 6.59075 6.62106 6.76216 6.88226 7.02801 7.31184 7.43032 7.94146 8.34175 8.53272 8.59158 8.96104 9.75693 11.11382 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.008786 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.129224 B = 3186.155469 C = 3435.842509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.091 3.909 4 C -0.109 4.109 5 C 0.052 3.948 6 N -0.523 5.523 7 C 0.189 3.811 8 H 0.046 0.954 9 C -0.167 4.167 10 C -0.590 4.590 11 H 0.046 0.954 12 C 0.035 3.965 13 N -0.899 5.899 14 Si 1.067 2.933 15 H -0.290 1.290 16 H -0.285 1.285 17 H -0.290 1.290 18 C 0.072 3.928 19 C -0.136 4.136 20 H 0.036 0.964 21 H 0.039 0.961 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.276 0.724 32 H 0.013 0.987 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 -2.830 4.276 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C 0.034 3.966 4 C -0.147 4.147 5 C -0.077 4.077 6 N -0.248 5.248 7 C 0.084 3.916 8 H 0.064 0.936 9 C -0.226 4.226 10 C -0.629 4.629 11 H 0.064 0.936 12 C -0.173 4.173 13 N -0.533 5.533 14 Si 0.896 3.104 15 H -0.217 1.217 16 H -0.211 1.211 17 H -0.216 1.216 18 C -0.056 4.056 19 C -0.174 4.174 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.110 -3.647 2.821 10.210 hybrid contribution -1.926 1.137 1.677 2.795 sum -11.036 -2.510 4.498 12.179 Atomic orbital electron populations 1.22706 0.82002 1.02090 0.99609 1.87908 1.18892 1.28797 1.95129 1.22261 0.94593 0.83296 0.96461 1.21641 0.94987 0.98902 0.99181 1.22028 0.99027 0.93885 0.92756 1.62828 1.17328 1.35313 1.09341 1.19493 0.91982 0.82684 0.97443 0.93620 1.22387 1.00807 1.01384 0.98009 1.21758 1.13535 1.31936 0.95663 0.93591 1.25716 0.92413 0.93532 1.05609 1.70678 1.35154 1.35885 1.11626 0.83590 0.75546 0.76326 0.74921 1.21653 1.21050 1.21583 1.21743 0.89680 0.93186 1.01031 1.22117 0.99994 0.99213 0.96102 0.94568 0.94281 0.90120 0.93191 0.90459 0.92247 0.91337 0.96308 0.93453 0.93996 0.95564 0.91253 0.96902 0.89442 0.90494 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.48 16 2 O -0.39 -6.23 10.35 -35.23 -0.36 -6.59 16 3 C 0.09 1.51 2.68 -26.61 -0.07 1.44 16 4 C -0.11 -1.89 5.75 -26.65 -0.15 -2.04 16 5 C 0.05 0.99 5.03 -3.83 -0.02 0.97 16 6 N -0.52 -11.80 4.63 -228.08 -1.06 -12.85 16 7 C 0.19 4.65 2.07 -68.87 -0.14 4.51 16 8 H 0.05 1.23 6.61 -51.93 -0.34 0.89 16 9 C -0.17 -3.57 8.44 37.16 0.31 -3.26 16 10 C -0.59 -16.13 7.05 -34.44 -0.24 -16.38 16 11 H 0.05 1.26 7.81 -52.48 -0.41 0.85 16 12 C 0.04 0.99 5.45 -17.82 -0.10 0.89 16 13 N -0.90 -26.94 13.63 55.43 0.76 -26.18 16 14 Si 1.07 25.17 29.91 -169.99 -5.08 20.09 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 19 C -0.14 -2.44 5.72 -26.65 -0.15 -2.60 16 20 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 21 H 0.04 0.44 7.96 -51.93 -0.41 0.02 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 24 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 27 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.88 6.81 -51.93 -0.35 0.52 16 30 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16 31 H 0.28 8.29 6.66 -40.82 -0.27 8.02 16 32 H 0.01 0.26 6.73 -51.93 -0.35 -0.09 16 33 H 0.09 1.99 6.91 -51.93 -0.36 1.63 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.05 0.86 7.96 -51.93 -0.41 0.44 16 LS Contribution 272.70 15.07 4.11 4.11 Total: -1.00 -29.49 272.70 -6.87 -36.37 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.74 Total: -1.43 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.51 Total: -13.51 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.30 Total: -39.04 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.36 Total: -6.59 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.49 -6.87 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.016 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds