Wall clock time and date at job start Mon Mar 30 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99990 * 2 1 4 4 C 1.53122 * 109.52487 * 150.00315 * 3 2 1 5 5 C 1.53034 * 109.27931 * 177.56251 * 4 3 2 6 6 N 1.46855 * 109.52267 * 300.81719 * 5 4 3 7 7 C 1.46894 * 111.00195 * 185.84020 * 6 5 4 8 8 H 1.09005 * 109.46811 * 54.99897 * 7 6 5 9 9 C 1.52997 * 109.47465 * 295.00261 * 7 6 5 10 10 C 1.50696 * 109.47294 * 174.99907 * 7 6 5 11 11 H 1.08004 * 119.99879 * 95.26248 * 10 7 6 12 12 C 1.37877 * 120.00357 * 275.26213 * 10 7 6 13 13 N 1.31518 * 119.99637 * 355.15314 * 12 10 7 14 14 Si 1.86792 * 120.00222 * 175.14731 * 12 10 7 15 15 H 1.48504 * 109.47249 * 90.00395 * 14 12 10 16 16 H 1.48504 * 109.47071 * 210.00086 * 14 12 10 17 17 H 1.48498 * 109.47345 * 330.00297 * 14 12 10 18 18 C 1.46849 * 111.19683 * 61.74400 * 6 5 4 19 19 C 1.53043 * 109.52165 * 298.25946 * 18 6 5 20 20 H 1.09000 * 109.47055 * 299.99567 * 1 2 3 21 21 H 1.08999 * 109.47442 * 59.99801 * 1 2 3 22 22 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.57708 * 29.84027 * 3 2 1 24 24 H 1.08998 * 109.50403 * 57.61453 * 4 3 2 25 25 H 1.09007 * 109.50060 * 297.50166 * 4 3 2 26 26 H 1.09003 * 109.46263 * 180.80605 * 5 4 3 27 27 H 1.08997 * 109.46748 * 60.83664 * 5 4 3 28 28 H 1.08999 * 109.47426 * 175.02080 * 9 7 6 29 29 H 1.09002 * 109.47282 * 295.02628 * 9 7 6 30 30 H 1.09006 * 109.47045 * 55.02088 * 9 7 6 31 31 H 0.97000 * 120.00074 * 5.11979 * 13 12 10 32 32 H 1.08995 * 109.46167 * 58.27419 * 18 6 5 33 33 H 1.08997 * 109.46015 * 178.24310 * 18 6 5 34 34 H 1.08997 * 109.50016 * 299.23516 * 19 18 6 35 35 H 1.08997 * 109.50019 * 179.12196 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3602 1.2646 0.7215 5 6 4.0053 2.6511 0.6652 6 7 4.1909 3.0496 -0.7360 7 6 4.9330 4.3138 -0.8300 8 1 5.8759 4.2225 -0.2907 9 6 4.1009 5.4407 -0.2148 10 6 5.2105 4.6270 -2.2777 11 1 4.5467 5.2790 -2.8260 12 6 6.3118 4.0811 -2.9023 13 7 7.1719 3.3650 -2.2116 14 14 6.5822 4.3585 -4.7296 15 1 7.3889 5.5893 -4.9295 16 1 7.3034 3.1951 -5.3056 17 1 5.2695 4.5118 -5.4067 18 6 2.9037 3.1417 -1.4367 19 6 2.2256 1.7697 -1.4431 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.3449 2.0014 0.5110 24 1 4.0118 0.5398 0.2335 25 1 3.2083 0.9758 1.7616 26 1 4.9732 2.6219 1.1657 27 1 3.3596 3.3728 1.1656 28 1 4.6859 6.3603 -0.2043 29 1 3.1984 5.5910 -0.8073 30 1 3.8254 5.1736 0.8055 31 1 6.9939 3.1584 -1.2807 32 1 2.2631 3.8610 -0.9266 33 1 3.0714 3.4687 -2.4629 34 1 2.8594 1.0530 -1.9653 35 1 1.2632 1.8418 -1.9497 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:37 Heat of formation + Delta-G solvation = -74.350752 kcal Electronic energy + Delta-G solvation = -15199.766005 eV Core-core repulsion = 12810.510327 eV Total energy + Delta-G solvation = -2389.255678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47679 -38.46822 -35.48054 -33.26961 -31.80955 -30.05564 -27.49260 -26.66979 -24.73251 -23.91157 -22.32403 -20.52598 -18.65241 -17.63870 -16.64845 -16.32556 -15.94947 -15.78100 -15.61289 -15.15795 -14.75432 -14.29559 -13.99659 -13.54926 -13.00695 -12.94790 -12.89326 -12.70104 -12.57018 -12.19035 -11.94580 -11.90971 -11.68513 -11.58744 -11.38611 -10.64432 -10.45807 -10.31137 -8.77445 -8.49276 -6.24207 1.54697 1.63669 1.80136 2.61116 2.79885 3.11352 3.59320 3.84287 3.89001 4.12397 4.26368 4.38224 4.47913 4.49196 4.51784 4.55469 4.59343 4.68085 4.75798 4.77649 4.86370 4.91266 5.02822 5.06142 5.18341 5.24249 5.36184 5.43805 5.96600 6.25798 6.28569 6.62216 6.66820 6.86979 7.61064 8.88942 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.008786 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.129224 B = 3186.155469 C = 3435.842509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.099 3.901 4 C -0.104 4.104 5 C 0.055 3.945 6 N -0.547 5.547 7 C 0.187 3.813 8 H 0.015 0.985 9 C -0.155 4.155 10 C -0.594 4.594 11 H 0.041 0.959 12 C -0.016 4.016 13 N -0.929 5.929 14 Si 1.111 2.889 15 H -0.275 1.275 16 H -0.289 1.289 17 H -0.274 1.274 18 C 0.077 3.923 19 C -0.129 4.129 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 -2.802 4.609 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.041 3.959 4 C -0.142 4.142 5 C -0.074 4.074 6 N -0.272 5.272 7 C 0.081 3.919 8 H 0.033 0.967 9 C -0.215 4.215 10 C -0.633 4.633 11 H 0.059 0.941 12 C -0.217 4.217 13 N -0.566 5.566 14 Si 0.934 3.066 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.199 1.199 18 C -0.051 4.051 19 C -0.168 4.168 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.186 -3.611 3.167 12.173 hybrid contribution -1.374 1.112 1.631 2.405 sum -12.559 -2.500 4.798 13.675 Atomic orbital electron populations 1.22981 0.79709 1.03823 1.00694 1.87886 1.21403 1.28159 1.95167 1.22089 0.94507 0.84217 0.95055 1.21575 0.95098 0.96823 1.00737 1.22026 0.99228 0.95437 0.90667 1.62519 1.18614 1.34207 1.11828 1.19339 0.91821 0.84851 0.95869 0.96745 1.22221 1.00234 0.99954 0.99048 1.22060 1.13026 1.31127 0.97055 0.94078 1.27022 0.92552 0.93045 1.09080 1.70803 1.36376 1.38245 1.11177 0.83022 0.76347 0.76579 0.70657 1.20034 1.21482 1.19875 1.21674 0.89128 0.95128 0.99186 1.22038 1.00241 0.96853 0.97619 0.92971 0.93631 0.88229 0.91237 0.92722 0.89634 0.92262 0.94698 0.93638 0.93557 0.93357 0.92744 0.95558 0.92329 0.93000 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.82 113.37 1.23 1.71 16 2 O -0.41 -11.94 10.35 -148.98 -1.54 -13.48 16 3 C 0.10 3.02 2.68 30.67 0.08 3.10 16 4 C -0.10 -3.44 5.75 30.65 0.18 -3.26 16 5 C 0.05 2.04 5.03 86.32 0.43 2.48 16 6 N -0.55 -24.65 4.63 -875.51 -4.06 -28.71 16 7 C 0.19 9.31 2.07 44.17 0.09 9.40 16 8 H 0.01 0.81 6.61 -2.38 -0.02 0.79 16 9 C -0.16 -6.48 8.44 71.98 0.61 -5.87 16 10 C -0.59 -32.86 7.05 25.60 0.18 -32.68 16 11 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 12 C -0.02 -0.92 5.45 84.65 0.46 -0.45 16 13 N -0.93 -57.28 13.63 21.45 0.29 -56.99 16 14 Si 1.11 50.95 29.91 68.60 2.05 53.01 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.08 3.10 4.68 86.33 0.40 3.51 16 19 C -0.13 -4.45 5.72 30.65 0.18 -4.27 16 20 H 0.05 0.90 8.09 -2.39 -0.02 0.88 16 21 H 0.05 0.86 7.96 -2.39 -0.02 0.84 16 22 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.88 7.79 -2.39 -0.02 1.86 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 27 H 0.04 1.20 6.62 -2.39 -0.02 1.18 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.86 6.81 -2.39 -0.02 1.85 16 30 H 0.05 1.77 6.42 -2.38 -0.02 1.75 16 31 H 0.26 16.42 6.66 -92.71 -0.62 15.80 16 32 H 0.03 0.98 6.73 -2.39 -0.02 0.97 16 33 H 0.06 2.67 6.91 -2.39 -0.02 2.65 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.28 7.96 -2.39 -0.02 2.26 16 Total: -1.00 -63.88 272.70 1.78 -62.11 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.19 Total: 10.42 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.84 Total: -26.35 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.77 Total: -85.70 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -1.54 Total: -13.48 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal Total: -63.88 1.78 -62.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.245 kcal (2) G-P(sol) polarization free energy of solvation -63.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds