Wall clock time and date at job start Mon Mar 30 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46751 * 2 1 4 4 C 1.50692 * 109.47260 * 119.99882 * 2 1 3 5 5 H 1.08001 * 120.00362 * 120.00312 * 4 2 1 6 6 C 1.37878 * 120.00257 * 300.00354 * 4 2 1 7 7 N 1.31519 * 119.99994 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00123 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46896 * 90.00216 * 8 6 4 10 10 H 1.48502 * 109.47095 * 209.99668 * 8 6 4 11 11 H 1.48494 * 109.47314 * 329.99844 * 8 6 4 12 12 N 1.46902 * 109.47304 * 240.00488 * 2 1 3 13 13 C 1.46899 * 110.99711 * 189.19563 * 12 2 1 14 14 C 1.46897 * 111.00031 * 65.24009 * 12 2 1 15 15 H 1.09002 * 110.54139 * 324.31719 * 14 12 2 16 16 C 1.54807 * 110.48975 * 86.94099 * 14 12 2 17 17 C 1.54994 * 102.09344 * 139.55426 * 16 14 12 18 18 O 1.44381 * 103.48837 * 322.97203 * 17 16 14 19 19 C 1.43738 * 106.97256 * 40.06582 * 18 17 16 20 20 H 1.09005 * 109.88540 * 93.05996 * 19 18 17 21 21 C 1.53002 * 109.87776 * 214.05684 * 19 18 17 22 22 H 1.09007 * 109.47135 * 61.78812 * 1 2 3 23 23 H 1.09007 * 109.47042 * 181.78654 * 1 2 3 24 24 H 1.08999 * 109.47164 * 301.78432 * 1 2 3 25 25 H 0.96995 * 120.00172 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47171 * 314.01302 * 13 12 2 27 27 H 1.09000 * 109.47587 * 74.02079 * 13 12 2 28 28 H 1.09000 * 109.46883 * 194.02013 * 13 12 2 29 29 H 1.08999 * 110.90742 * 21.35769 * 16 14 12 30 30 H 1.08998 * 110.93462 * 257.76576 * 16 14 12 31 31 H 1.09001 * 110.61872 * 204.47294 * 17 16 14 32 32 H 1.08998 * 110.62091 * 81.47656 * 17 16 14 33 33 H 1.09000 * 109.46968 * 51.32470 * 21 19 18 34 34 H 1.08999 * 109.47772 * 171.32536 * 21 19 18 35 35 H 1.09000 * 109.47450 * 291.33460 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 3.4715 -0.9047 -1.1289 14 6 1.6537 0.0423 -2.4177 15 1 0.6733 0.5053 -2.3052 16 6 2.7233 1.1116 -2.7476 17 6 2.8325 0.9968 -4.2895 18 8 2.6889 -0.4191 -4.5328 19 6 1.6695 -0.8970 -3.6393 20 1 0.7003 -0.8768 -4.1378 21 6 1.9953 -2.3241 -3.1940 22 1 -0.3634 0.4858 -0.9056 23 1 -0.3633 -1.0272 0.0320 24 1 -0.3633 0.5413 0.8735 25 1 0.7094 1.1618 3.4844 26 1 3.9579 0.0152 -0.8043 27 1 3.6881 -1.7010 -0.4168 28 1 3.8459 -1.1858 -2.1132 29 1 3.6738 0.8709 -2.2714 30 1 2.3841 2.1052 -2.4546 31 1 3.8055 1.3485 -4.6326 32 1 2.0297 1.5529 -4.7736 33 1 3.0186 -2.3634 -2.8204 34 1 1.3080 -2.6239 -2.4029 35 1 1.8919 -3.0018 -4.0414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134694292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:41 Heat of formation + Delta-G solvation = -26.865627 kcal Electronic energy + Delta-G solvation = -15458.428981 eV Core-core repulsion = 13071.232412 eV Total energy + Delta-G solvation = -2387.196569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72483 -36.26646 -32.97712 -31.06010 -30.38265 -28.86355 -26.31129 -24.80728 -23.57883 -21.65556 -20.75853 -18.52072 -16.53038 -16.16403 -15.45856 -15.02707 -14.79503 -14.10065 -13.61709 -13.27321 -12.59171 -12.25713 -11.95062 -11.81819 -11.68505 -11.21614 -11.08646 -10.92280 -10.73213 -10.63125 -10.52272 -10.16398 -10.01206 -9.97060 -9.74064 -9.30702 -8.82295 -8.45039 -7.15070 -6.03191 -4.07467 3.28891 3.35812 3.39701 4.22745 4.38690 4.81775 5.13593 5.25067 5.29613 5.40776 5.51191 5.64246 5.87836 5.91958 6.00323 6.09729 6.21019 6.34248 6.37824 6.49996 6.53558 6.77954 6.84426 6.95141 7.04671 7.14694 7.28405 7.51427 7.70676 7.82297 8.16382 8.30932 8.58298 8.99327 9.57885 11.03861 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.008707 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.749072 B = 3215.123140 C = 3327.542117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.521 5.521 13 C 0.036 3.964 14 C 0.051 3.949 15 H 0.090 0.910 16 C -0.194 4.194 17 C 0.051 3.949 18 O -0.383 6.383 19 C 0.079 3.921 20 H 0.060 0.940 21 C -0.137 4.137 22 H 0.006 0.994 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.260 0.740 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -0.535 -9.488 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.244 5.244 13 C -0.112 4.112 14 C -0.059 4.059 15 H 0.108 0.892 16 C -0.233 4.233 17 C -0.027 4.027 18 O -0.302 6.302 19 C 0.021 3.979 20 H 0.078 0.922 21 C -0.194 4.194 22 H 0.025 0.975 23 H 0.054 0.946 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.727 -1.025 -9.484 9.694 hybrid contribution 0.494 0.696 1.105 1.397 sum 2.221 -0.329 -8.379 8.674 Atomic orbital electron populations 1.21837 0.97792 0.99896 0.99368 1.19290 0.92296 0.92084 0.85817 0.98364 1.21187 1.31032 1.12343 0.89781 0.91832 1.24935 0.95175 0.95084 0.99040 1.69895 1.36923 1.23059 1.23392 0.86532 0.78421 0.80099 0.82562 1.20852 1.21282 1.19842 1.62313 1.12594 1.47701 1.01833 1.22389 0.88875 1.00125 0.99844 1.23148 0.98770 0.91791 0.92234 0.89197 1.23908 1.02337 1.00811 0.96228 1.23377 1.00926 0.83204 0.95150 1.88837 1.58898 1.21907 1.60578 1.22783 0.90422 0.95803 0.88934 0.92183 1.21880 1.04060 0.93193 1.00229 0.97482 0.94623 0.89805 0.93019 0.96053 0.91433 0.92850 0.89317 0.90852 0.89782 0.92827 0.91351 0.89725 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.95 37.15 0.33 -2.81 16 2 C 0.21 5.20 1.96 -68.87 -0.14 5.06 16 3 H 0.00 -0.03 8.06 -51.93 -0.42 -0.45 16 4 C -0.50 -13.56 8.00 -34.44 -0.28 -13.84 16 5 H 0.06 1.70 6.20 -52.49 -0.33 1.38 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.23 11.34 55.43 0.63 -24.60 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.52 -10.83 3.14 -226.47 -0.71 -11.54 16 13 C 0.04 0.69 6.43 60.06 0.39 1.08 16 14 C 0.05 0.92 2.87 -66.19 -0.19 0.73 16 15 H 0.09 1.68 5.85 -51.93 -0.30 1.37 16 16 C -0.19 -3.16 6.28 -24.73 -0.16 -3.31 16 17 C 0.05 0.72 7.72 38.21 0.29 1.01 16 18 O -0.38 -6.35 11.19 -35.23 -0.39 -6.74 16 19 C 0.08 1.30 3.80 -26.15 -0.10 1.20 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.14 -2.22 8.43 37.16 0.31 -1.90 16 22 H 0.01 0.14 6.16 -51.93 -0.32 -0.18 16 23 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 24 H 0.08 2.21 6.12 -51.93 -0.32 1.89 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.43 6.77 -51.93 -0.35 0.08 16 27 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 28 H 0.05 0.94 5.27 -51.93 -0.27 0.67 16 29 H 0.09 1.52 5.07 -51.93 -0.26 1.26 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.15 5.13 -51.93 -0.27 0.88 16 34 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 262.25 15.07 3.95 3.95 Total: -1.00 -27.87 262.25 -6.42 -34.29 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.25 Total: -0.25 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 0.38 Total: -11.27 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.08 Total: -36.14 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.39 Total: -6.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.87 -6.42 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134694292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.423 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds