Wall clock time and date at job start Mon Mar 30 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46751 * 2 1 4 4 C 1.50692 * 109.47260 * 119.99882 * 2 1 3 5 5 H 1.08001 * 120.00362 * 120.00312 * 4 2 1 6 6 C 1.37878 * 120.00257 * 300.00354 * 4 2 1 7 7 N 1.31519 * 119.99994 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00123 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46896 * 90.00216 * 8 6 4 10 10 H 1.48502 * 109.47095 * 209.99668 * 8 6 4 11 11 H 1.48494 * 109.47314 * 329.99844 * 8 6 4 12 12 N 1.46902 * 109.47304 * 240.00488 * 2 1 3 13 13 C 1.46899 * 110.99711 * 189.19563 * 12 2 1 14 14 C 1.46897 * 111.00031 * 65.24009 * 12 2 1 15 15 H 1.09002 * 110.54139 * 324.31719 * 14 12 2 16 16 C 1.54807 * 110.48975 * 86.94099 * 14 12 2 17 17 C 1.54994 * 102.09344 * 139.55426 * 16 14 12 18 18 O 1.44381 * 103.48837 * 322.97203 * 17 16 14 19 19 C 1.43738 * 106.97256 * 40.06582 * 18 17 16 20 20 H 1.09005 * 109.88540 * 93.05996 * 19 18 17 21 21 C 1.53002 * 109.87776 * 214.05684 * 19 18 17 22 22 H 1.09007 * 109.47135 * 61.78812 * 1 2 3 23 23 H 1.09007 * 109.47042 * 181.78654 * 1 2 3 24 24 H 1.08999 * 109.47164 * 301.78432 * 1 2 3 25 25 H 0.96995 * 120.00172 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47171 * 314.01302 * 13 12 2 27 27 H 1.09000 * 109.47587 * 74.02079 * 13 12 2 28 28 H 1.09000 * 109.46883 * 194.02013 * 13 12 2 29 29 H 1.08999 * 110.90742 * 21.35769 * 16 14 12 30 30 H 1.08998 * 110.93462 * 257.76576 * 16 14 12 31 31 H 1.09001 * 110.61872 * 204.47294 * 17 16 14 32 32 H 1.08998 * 110.62091 * 81.47656 * 17 16 14 33 33 H 1.09000 * 109.46968 * 51.32470 * 21 19 18 34 34 H 1.08999 * 109.47772 * 171.32536 * 21 19 18 35 35 H 1.09000 * 109.47450 * 291.33460 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0197 -0.6924 -1.1995 13 6 3.4715 -0.9047 -1.1289 14 6 1.6537 0.0423 -2.4177 15 1 0.6733 0.5053 -2.3052 16 6 2.7233 1.1116 -2.7476 17 6 2.8325 0.9968 -4.2895 18 8 2.6889 -0.4191 -4.5328 19 6 1.6695 -0.8970 -3.6393 20 1 0.7003 -0.8768 -4.1378 21 6 1.9953 -2.3241 -3.1940 22 1 -0.3634 0.4858 -0.9056 23 1 -0.3633 -1.0272 0.0320 24 1 -0.3633 0.5413 0.8735 25 1 0.7094 1.1618 3.4844 26 1 3.9579 0.0152 -0.8043 27 1 3.6881 -1.7010 -0.4168 28 1 3.8459 -1.1858 -2.1132 29 1 3.6738 0.8709 -2.2714 30 1 2.3841 2.1052 -2.4546 31 1 3.8055 1.3485 -4.6326 32 1 2.0297 1.5529 -4.7736 33 1 3.0186 -2.3634 -2.8204 34 1 1.3080 -2.6239 -2.4029 35 1 1.8919 -3.0018 -4.0414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134694292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:41 Heat of formation + Delta-G solvation = -44.377014 kcal Electronic energy + Delta-G solvation = -15459.188332 eV Core-core repulsion = 13071.232412 eV Total energy + Delta-G solvation = -2387.955919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11410 -37.88553 -34.88891 -32.38398 -32.01722 -30.57341 -27.93483 -26.67754 -25.09202 -23.02728 -22.41400 -20.10616 -18.36431 -17.81248 -16.79837 -16.58860 -16.33039 -15.77239 -15.24777 -14.83784 -14.42039 -13.69071 -13.52739 -13.33841 -13.14730 -12.87461 -12.85636 -12.56699 -12.50667 -12.15798 -12.14716 -11.90487 -11.85049 -11.52339 -11.30286 -10.87478 -10.52793 -10.48235 -8.86063 -8.11314 -6.22213 1.41287 1.42952 1.53027 2.42030 2.99308 3.17038 3.27636 3.80116 3.97737 4.13224 4.18337 4.33878 4.48945 4.61282 4.68944 4.76098 4.80355 4.89191 4.92153 5.00145 5.06442 5.09997 5.15277 5.27079 5.29967 5.53081 5.62381 5.75615 5.80816 6.02149 6.25139 6.40478 6.74810 6.93446 7.47180 8.94848 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048961 B = 0.008707 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.749072 B = 3215.123140 C = 3327.542117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.218 3.782 3 H -0.035 1.035 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.522 5.522 13 C 0.045 3.955 14 C 0.043 3.957 15 H 0.083 0.917 16 C -0.193 4.193 17 C 0.055 3.945 18 O -0.392 6.392 19 C 0.083 3.917 20 H 0.076 0.924 21 C -0.133 4.133 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.260 0.740 26 H 0.009 0.991 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -1.011 -10.577 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H -0.017 1.017 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.245 5.245 13 C -0.103 4.103 14 C -0.067 4.067 15 H 0.101 0.899 16 C -0.232 4.232 17 C -0.021 4.021 18 O -0.312 6.312 19 C 0.025 3.975 20 H 0.093 0.907 21 C -0.190 4.190 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.130 -1.505 -10.593 10.910 hybrid contribution 0.375 0.874 1.387 1.682 sum 2.505 -0.630 -9.206 9.562 Atomic orbital electron populations 1.21650 0.97429 0.99359 0.99306 1.19057 0.92525 0.90300 0.87041 1.01750 1.21480 1.30982 1.12318 0.90965 0.92147 1.25691 0.95406 0.95778 1.01857 1.70020 1.37831 1.24215 1.23948 0.85565 0.77891 0.79143 0.79082 1.20397 1.21014 1.19305 1.62232 1.13180 1.47608 1.01499 1.22316 0.88205 0.99079 1.00685 1.23244 0.98945 0.92764 0.91700 0.89883 1.23857 1.01010 1.00153 0.98180 1.23518 1.03024 0.82303 0.93257 1.88827 1.58864 1.23190 1.60315 1.22738 0.91301 0.95258 0.88160 0.90655 1.21809 1.03063 0.93602 1.00512 0.95202 0.95021 0.92371 0.93038 0.97244 0.92597 0.90676 0.90379 0.90837 0.87560 0.90893 0.92141 0.91119 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.95 71.98 0.64 -5.13 16 2 C 0.22 10.86 1.96 44.16 0.09 10.95 16 3 H -0.03 -1.95 8.06 -2.38 -0.02 -1.97 16 4 C -0.52 -28.16 8.00 25.60 0.20 -27.95 16 5 H 0.06 3.25 6.20 -2.91 -0.02 3.23 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -52.68 11.34 21.45 0.24 -52.44 16 8 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.52 -21.53 3.14 -870.42 -2.73 -24.27 16 13 C 0.04 1.74 6.43 127.69 0.82 2.56 16 14 C 0.04 1.51 2.87 45.91 0.13 1.64 16 15 H 0.08 3.00 5.85 -2.39 -0.01 2.99 16 16 C -0.19 -6.02 6.28 31.89 0.20 -5.82 16 17 C 0.06 1.41 7.72 72.66 0.56 1.97 16 18 O -0.39 -11.82 11.19 -148.98 -1.67 -13.49 16 19 C 0.08 2.56 3.80 30.97 0.12 2.67 16 20 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 21 C -0.13 -4.05 8.43 71.98 0.61 -3.44 16 22 H 0.03 1.26 6.16 -2.38 -0.01 1.24 16 23 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 3.12 6.12 -2.39 -0.01 3.10 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.01 0.38 6.77 -2.39 -0.02 0.36 16 27 H 0.06 2.27 6.62 -2.39 -0.02 2.25 16 28 H 0.07 2.57 5.27 -2.39 -0.01 2.56 16 29 H 0.08 2.60 5.07 -2.39 -0.01 2.59 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.92 5.13 -2.39 -0.01 1.90 16 34 H 0.07 2.36 7.60 -2.39 -0.02 2.34 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -58.60 262.25 2.76 -55.84 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.07 Total: 10.27 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.82 Total: -21.48 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -2.49 Total: -76.70 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.67 Total: -13.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -58.60 2.76 -55.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134694292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.467 kcal (2) G-P(sol) polarization free energy of solvation -58.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds