Wall clock time and date at job start Mon Mar 30 2020 20:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.27431 * 2 1 4 4 C 1.54596 * 110.30613 * 237.91677 * 2 1 3 5 5 C 1.54944 * 102.91805 * 219.02705 * 4 2 1 6 6 H 1.09006 * 110.80622 * 278.91003 * 5 4 2 7 7 C 1.52996 * 110.66641 * 155.85187 * 5 4 2 8 8 N 1.48523 * 103.22733 * 37.41434 * 5 4 2 9 9 C 1.46899 * 111.00244 * 200.28012 * 8 5 4 10 10 C 1.50703 * 109.47180 * 69.87215 * 9 8 5 11 11 H 1.07994 * 119.99603 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 C 1.47904 * 105.82142 * 320.79306 * 8 5 4 19 19 H 1.09002 * 109.91782 * 265.97472 * 18 8 5 20 20 C 1.52998 * 109.91909 * 144.68308 * 18 8 5 21 21 O 1.42905 * 109.47186 * 66.45406 * 20 18 8 22 22 H 1.08996 * 109.46760 * 180.63048 * 1 2 3 23 23 H 1.08997 * 109.46907 * 300.63529 * 1 2 3 24 24 H 1.09004 * 109.46710 * 60.63185 * 1 2 3 25 25 H 1.09000 * 110.72436 * 100.67134 * 4 2 1 26 26 H 1.08998 * 110.87762 * 337.45502 * 4 2 1 27 27 H 1.09002 * 109.46930 * 306.18941 * 7 5 4 28 28 H 1.09000 * 109.47774 * 66.18824 * 7 5 4 29 29 H 1.09001 * 109.47308 * 186.19208 * 7 5 4 30 30 H 1.09005 * 109.47198 * 309.87412 * 9 8 5 31 31 H 1.08998 * 109.47329 * 189.87359 * 9 8 5 32 32 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 33 33 H 1.08998 * 109.47655 * 186.44924 * 20 18 8 34 34 H 1.09003 * 109.47485 * 306.45442 * 20 18 8 35 35 H 0.96699 * 113.99876 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7701 -1.2285 5 6 3.2871 -1.5321 -0.6536 6 1 4.1589 -0.8803 -0.5969 7 6 3.5956 -2.7714 -1.4962 8 7 2.8346 -1.9221 0.7062 9 6 3.9795 -2.2235 1.5758 10 6 4.7233 -0.9501 1.8865 11 1 4.3795 -0.0109 1.4791 12 6 5.8426 -0.9843 2.6909 13 7 6.2609 -2.1280 3.1874 14 14 6.7640 0.5942 3.0766 15 1 6.0949 1.7355 2.4021 16 1 8.1624 0.4827 2.5895 17 1 6.7677 0.8192 4.5445 18 6 2.0666 -0.7681 1.2220 19 1 2.7180 -0.1216 1.8103 20 6 0.9005 -1.2602 2.0815 21 8 1.4092 -1.8889 3.2597 22 1 -0.3633 -1.0276 0.0113 23 1 -0.3633 0.5237 0.8842 24 1 -0.3633 0.5040 -0.8956 25 1 2.3775 -0.0786 -2.0116 26 1 1.3192 -1.4678 -1.6063 27 1 2.6978 -3.3829 -1.5852 28 1 3.9253 -2.4634 -2.4884 29 1 4.3836 -3.3508 -1.0151 30 1 4.6475 -2.9199 1.0688 31 1 3.6233 -2.6717 2.5033 32 1 5.7822 -2.9476 2.9874 33 1 0.2740 -0.4139 2.3630 34 1 0.3081 -1.9778 1.5137 35 1 0.7238 -2.2263 3.8526 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142450686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:49 Heat of formation + Delta-G solvation = -54.913201 kcal Electronic energy + Delta-G solvation = -15468.354874 eV Core-core repulsion = 13079.942071 eV Total energy + Delta-G solvation = -2388.412803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13176 -35.76491 -33.81996 -32.31411 -30.79904 -27.06922 -26.87396 -24.80387 -22.85274 -22.07569 -19.59694 -18.57732 -16.95753 -16.41066 -15.65717 -14.74771 -13.84019 -13.74479 -13.62275 -13.08099 -12.90778 -12.75909 -12.13674 -12.04970 -11.54185 -11.33758 -11.22925 -10.81453 -10.63859 -10.31723 -10.24292 -10.11938 -10.06426 -9.92793 -9.67219 -9.23835 -9.02177 -8.24009 -7.06586 -6.27423 -3.98028 3.44818 3.49283 3.61105 4.58110 4.80770 4.90586 5.10996 5.28637 5.40429 5.47423 5.69926 5.79540 5.82260 5.87615 6.01794 6.07384 6.10722 6.16506 6.23726 6.27428 6.43506 6.53371 6.58898 6.76179 6.93746 7.03020 7.16346 7.53492 7.99965 8.17489 8.26035 8.33275 8.65003 8.91973 9.73853 11.10222 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027491 B = 0.011414 C = 0.010401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.263876 B = 2452.484037 C = 2691.348270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.113 4.113 5 C 0.060 3.940 6 H 0.061 0.939 7 C -0.128 4.128 8 N -0.502 5.502 9 C 0.170 3.830 10 C -0.620 4.620 11 H 0.051 0.949 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 1.069 2.931 15 H -0.292 1.292 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.062 3.938 19 H 0.089 0.911 20 C 0.096 3.904 21 O -0.554 6.554 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.270 0.730 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 2.982 -6.279 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.049 4.049 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.226 5.226 9 C 0.044 3.956 10 C -0.659 4.659 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.548 5.548 14 Si 0.898 3.102 15 H -0.218 1.218 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.047 4.047 19 H 0.107 0.893 20 C 0.018 3.982 21 O -0.357 6.357 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.214 3.271 -5.747 11.342 hybrid contribution -1.282 0.032 -0.495 1.374 sum -10.496 3.303 -6.242 12.651 Atomic orbital electron populations 1.21925 0.95498 1.01760 1.00924 1.21945 0.95330 0.99006 0.95413 0.91236 1.22602 0.97898 0.98269 0.96350 1.22617 0.96105 0.95482 0.90699 0.92077 1.21604 1.01225 0.97792 0.97994 1.64908 1.22780 1.33383 1.01526 1.19924 0.87181 0.96177 0.92344 1.22539 1.14190 0.94644 1.34487 0.93084 1.25680 0.95868 1.03190 0.93669 1.70695 1.41616 0.99133 1.43347 0.83559 0.75804 0.74447 0.76406 1.21781 1.21465 1.21368 1.22445 0.94830 0.93235 0.94188 0.89304 1.22337 0.95393 0.94505 0.85938 1.86773 1.36168 1.78815 1.33920 0.92233 0.92759 0.93267 0.92266 0.91511 0.93002 0.93486 0.92703 0.96853 0.94690 0.91933 0.94761 0.94188 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.91 37.16 0.29 -1.59 16 2 C -0.10 -1.62 3.58 -89.26 -0.32 -1.94 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.11 -1.84 6.04 -24.87 -0.15 -1.99 16 5 C 0.06 1.19 2.76 -65.79 -0.18 1.01 16 6 H 0.06 1.39 7.04 -51.93 -0.37 1.03 16 7 C -0.13 -2.28 9.49 37.16 0.35 -1.93 16 8 N -0.50 -11.26 4.84 -216.22 -1.05 -12.31 16 9 C 0.17 4.59 4.34 -4.98 -0.02 4.56 16 10 C -0.62 -17.75 7.00 -34.44 -0.24 -17.99 16 11 H 0.05 1.46 6.00 -52.49 -0.32 1.15 16 12 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 13 N -0.91 -28.50 13.65 55.43 0.76 -27.75 16 14 Si 1.07 26.13 29.90 -169.99 -5.08 21.05 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.06 1.27 2.41 -66.65 -0.16 1.11 16 19 H 0.09 2.17 5.28 -51.93 -0.27 1.90 16 20 C 0.10 1.72 5.50 37.16 0.20 1.93 16 21 O -0.55 -11.05 12.45 -35.23 -0.44 -11.49 16 22 H 0.06 0.78 6.74 -51.93 -0.35 0.43 16 23 H 0.05 0.67 6.80 -51.93 -0.35 0.31 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 27 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 1.06 7.28 -51.93 -0.38 0.69 16 30 H 0.01 0.38 7.02 -51.93 -0.36 0.02 16 31 H 0.04 1.04 7.05 -51.93 -0.37 0.67 16 32 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 33 H 0.03 0.53 6.62 -51.93 -0.34 0.19 16 34 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 35 H 0.36 5.08 9.12 45.56 0.42 5.50 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -32.40 268.17 -6.75 -39.15 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.66 Total: 3.62 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.32 Total: -16.31 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.29 Total: -40.06 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.44 Total: -11.49 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.40 -6.75 -39.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142450686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.764 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds