Wall clock time and date at job start Mon Mar 30 2020 20:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.35128 * 2 1 4 4 C 1.54600 * 110.30630 * 237.85788 * 2 1 3 5 5 C 1.54940 * 102.92225 * 263.04126 * 4 2 1 6 6 H 1.08992 * 110.66660 * 81.02141 * 5 4 2 7 7 C 1.52998 * 110.66628 * 204.15774 * 5 4 2 8 8 N 1.48539 * 103.22731 * 322.58679 * 5 4 2 9 9 C 1.46893 * 110.99834 * 159.72158 * 8 5 4 10 10 C 1.50702 * 109.47215 * 319.75036 * 9 8 5 11 11 H 1.07995 * 120.00061 * 356.13854 * 10 9 8 12 12 C 1.37880 * 120.00026 * 176.13864 * 10 9 8 13 13 N 1.31514 * 120.00058 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99891 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47297 * 90.00142 * 14 12 10 16 16 H 1.48501 * 109.46955 * 210.00223 * 14 12 10 17 17 H 1.48500 * 109.47064 * 330.00096 * 14 12 10 18 18 C 1.47903 * 105.81939 * 39.20574 * 8 5 4 19 19 H 1.08992 * 110.08345 * 215.22314 * 18 8 5 20 20 C 1.53006 * 109.91371 * 94.02064 * 18 8 5 21 21 O 1.42897 * 109.46914 * 69.56548 * 20 18 8 22 22 H 1.08994 * 109.47238 * 297.85382 * 1 2 3 23 23 H 1.08995 * 109.47158 * 57.85993 * 1 2 3 24 24 H 1.09010 * 109.47118 * 177.85739 * 1 2 3 25 25 H 1.08995 * 110.72408 * 21.40055 * 4 2 1 26 26 H 1.09006 * 110.71999 * 144.50730 * 4 2 1 27 27 H 1.08994 * 109.47706 * 63.54715 * 7 5 4 28 28 H 1.09001 * 109.47110 * 183.54957 * 7 5 4 29 29 H 1.09001 * 109.47078 * 303.54885 * 7 5 4 30 30 H 1.08999 * 109.47616 * 79.75101 * 9 8 5 31 31 H 1.09003 * 109.46947 * 199.75562 * 9 8 5 32 32 H 0.96999 * 120.00086 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.46939 * 309.56145 * 20 18 8 34 34 H 1.09004 * 109.46723 * 189.56352 * 20 18 8 35 35 H 0.96698 * 113.99957 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0219 0.0000 4 6 2.0665 -0.7714 -1.2277 5 6 2.3583 -2.1798 -0.6516 6 1 1.4433 -2.7691 -0.5942 7 6 3.4141 -2.8994 -1.4933 8 7 2.8809 -1.8892 0.7082 9 6 2.7668 -3.0668 1.5787 10 6 1.4512 -3.7556 1.3222 11 1 0.7414 -3.3243 0.6320 12 6 1.1537 -4.9365 1.9688 13 7 2.0178 -5.4615 2.8098 14 14 -0.4768 -5.7906 1.6503 15 1 -0.3262 -6.7382 0.5169 16 1 -0.8913 -6.5353 2.8664 17 1 -1.5091 -4.7773 1.3145 18 6 2.0645 -0.7684 1.2229 19 1 2.6784 -0.1091 1.8364 20 6 0.8964 -1.3109 2.0489 21 8 1.3939 -1.8758 3.2635 22 1 -0.3633 0.4801 0.9085 23 1 -0.3633 0.5467 -0.8701 24 1 -0.3634 -1.0270 -0.0384 25 1 1.3102 -0.8241 -2.0108 26 1 2.9789 -0.3093 -1.6050 27 1 4.3555 -2.3526 -1.4405 28 1 3.5584 -3.9092 -1.1093 29 1 3.0804 -2.9490 -2.5298 30 1 3.5848 -3.7556 1.3674 31 1 2.8157 -2.7538 2.6217 32 1 1.8084 -6.2921 3.2649 33 1 0.3736 -2.0785 1.4784 34 1 0.2077 -0.4986 2.2813 35 1 0.7069 -2.2404 3.8381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142451101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:51 Heat of formation + Delta-G solvation = -45.890822 kcal Electronic energy + Delta-G solvation = -15903.206585 eV Core-core repulsion = 13515.185022 eV Total energy + Delta-G solvation = -2388.021563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04629 -36.91443 -35.26674 -33.71458 -32.41135 -28.92084 -28.14268 -26.85847 -24.38901 -23.95457 -20.81049 -19.82056 -18.58695 -17.95978 -16.88401 -16.67582 -15.91552 -15.35724 -14.88921 -14.51165 -14.15684 -13.85993 -13.49092 -13.32377 -13.13402 -12.97710 -12.81517 -12.55289 -12.42864 -12.11550 -11.80639 -11.75728 -11.55943 -11.33783 -11.15759 -10.72505 -10.45767 -9.94581 -8.85967 -7.99605 -6.08636 1.37649 1.40283 1.47392 2.43516 3.25246 3.44297 3.70739 3.90687 3.95247 4.32044 4.43397 4.56277 4.63119 4.70077 4.75831 4.78979 4.88566 4.96558 5.02319 5.10530 5.22967 5.27260 5.29149 5.45159 5.50524 5.53795 5.70394 5.73093 6.04407 6.24884 6.44357 6.65389 7.06512 7.18322 7.52680 9.05456 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029304 B = 0.013275 C = 0.012202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.256671 B = 2108.791084 C = 2294.065198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.092 0.908 4 C -0.107 4.107 5 C 0.047 3.953 6 H 0.054 0.946 7 C -0.121 4.121 8 N -0.525 5.525 9 C 0.179 3.821 10 C -0.513 4.513 11 H 0.069 0.931 12 C 0.013 3.987 13 N -0.927 5.927 14 Si 0.940 3.060 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.263 1.263 18 C 0.071 3.929 19 H 0.061 0.939 20 C 0.050 3.950 21 O -0.564 6.564 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.073 0.927 30 H -0.024 1.024 31 H 0.053 0.947 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 9.968 -6.619 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.061 4.061 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.249 5.249 9 C 0.053 3.947 10 C -0.552 4.552 11 H 0.087 0.913 12 C -0.185 4.185 13 N -0.568 5.568 14 Si 0.767 3.233 15 H -0.210 1.210 16 H -0.215 1.215 17 H -0.187 1.187 18 C -0.038 4.038 19 H 0.080 0.920 20 C -0.027 4.027 21 O -0.370 6.370 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.092 0.908 30 H -0.006 1.006 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.566 10.153 -6.769 12.713 hybrid contribution -1.828 -1.543 0.686 2.489 sum -5.394 8.610 -6.083 11.842 Atomic orbital electron populations 1.21922 0.94071 1.01449 1.02612 1.21941 0.96438 0.99332 0.93145 0.88978 1.22603 1.01255 0.93876 0.96762 1.22918 0.97317 0.96378 0.89503 0.92850 1.21503 0.98719 0.98856 0.98837 1.65053 1.49556 1.07386 1.02919 1.19908 0.93495 0.86886 0.94390 1.21872 1.03083 1.06524 1.23716 0.91312 1.25616 0.99397 0.98047 0.95484 1.70111 1.36914 1.20220 1.29526 0.85836 0.81191 0.79055 0.77225 1.20958 1.21467 1.18725 1.22459 0.92581 0.93317 0.95434 0.92044 1.23222 0.96572 0.96147 0.86795 1.86581 1.37487 1.80061 1.32854 0.91810 0.90588 0.94019 0.89847 0.90588 0.92703 0.95721 0.90829 1.00605 0.92990 0.93439 0.91636 0.93796 0.78737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 7.88 71.98 0.57 -3.04 16 2 C -0.09 -2.58 3.59 -9.91 -0.04 -2.62 16 3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.11 -3.12 6.05 31.80 0.19 -2.93 16 5 C 0.05 1.82 2.57 45.26 0.12 1.94 16 6 H 0.05 2.33 5.01 -2.39 -0.01 2.32 16 7 C -0.12 -4.42 9.48 71.98 0.68 -3.74 16 8 N -0.53 -23.36 5.23 -837.98 -4.38 -27.74 16 9 C 0.18 9.67 4.82 85.56 0.41 10.08 16 10 C -0.51 -27.11 5.06 25.60 0.13 -26.98 16 11 H 0.07 3.51 3.98 -2.91 -0.01 3.50 16 12 C 0.01 0.69 5.46 84.66 0.46 1.16 16 13 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 14 Si 0.94 42.85 29.54 68.60 2.03 44.88 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.07 2.72 3.50 45.06 0.16 2.88 16 19 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 20 C 0.05 1.97 4.43 71.98 0.32 2.29 16 21 O -0.56 -25.15 9.63 -148.98 -1.43 -26.58 16 22 H 0.06 1.50 6.61 -2.39 -0.02 1.49 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.04 1.21 6.95 -2.38 -0.02 1.20 16 25 H 0.08 2.07 7.85 -2.39 -0.02 2.05 16 26 H 0.08 2.05 8.06 -2.38 -0.02 2.03 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 30 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 31 H 0.05 3.08 5.21 -1.47 -0.01 3.07 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.07 2.84 3.62 -2.39 -0.01 2.83 16 34 H 0.04 1.45 6.28 -2.39 -0.01 1.44 16 35 H 0.37 14.42 9.12 -71.50 -0.65 13.77 16 Total: -1.00 -63.35 259.81 -0.06 -63.41 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.44 Total: 22.04 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.00 Total: -20.97 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -4.10 Total: -82.78 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.43 Total: -26.58 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.35 -0.06 -63.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142451101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.520 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds