Wall clock time and date at job start Mon Mar 30 2020 20:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99920 * 2 1 4 4 H 1.08994 * 109.53888 * 330.09924 * 3 2 1 5 5 C 1.53126 * 109.50297 * 90.19645 * 3 2 1 6 6 C 1.53099 * 109.15071 * 177.59256 * 5 3 2 7 7 C 1.53034 * 109.29509 * 302.33888 * 6 5 3 8 8 N 1.46847 * 109.51345 * 59.18740 * 7 6 5 9 9 C 1.46898 * 110.99897 * 174.16738 * 8 7 6 10 10 H 1.09002 * 109.47317 * 63.95538 * 9 8 7 11 11 C 1.52998 * 109.46920 * 183.94846 * 9 8 7 12 12 C 1.50696 * 109.47292 * 303.95138 * 9 8 7 13 13 H 1.08005 * 119.99937 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00135 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00079 * 180.02562 * 14 12 9 16 16 Si 1.86803 * 120.00285 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47002 * 90.00093 * 16 14 12 18 18 H 1.48496 * 109.47451 * 210.00166 * 16 14 12 19 19 H 1.48505 * 109.46912 * 330.00535 * 16 14 12 20 20 C 1.46854 * 111.19790 * 298.26320 * 8 7 6 21 21 H 1.09001 * 109.47196 * 299.99869 * 1 2 3 22 22 H 1.08991 * 109.47506 * 60.00174 * 1 2 3 23 23 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.52264 * 297.49919 * 5 3 2 25 25 H 1.09001 * 109.52183 * 57.69204 * 5 3 2 26 26 H 1.09007 * 109.48839 * 182.39531 * 6 5 3 27 27 H 1.09009 * 109.50682 * 62.29317 * 6 5 3 28 28 H 1.09002 * 109.46271 * 299.17460 * 7 6 5 29 29 H 1.08994 * 109.46242 * 179.19760 * 7 6 5 30 30 H 1.09001 * 109.47056 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47418 * 300.00070 * 11 9 8 32 32 H 1.09001 * 109.47020 * 60.00494 * 11 9 8 33 33 H 0.97003 * 120.00163 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.46229 * 181.76227 * 20 8 7 35 35 H 1.09008 * 109.45822 * 301.73281 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0006 -0.5120 5 6 2.2226 1.7704 1.4434 6 6 2.9003 3.1433 1.4342 7 6 4.2237 3.0488 0.6715 8 7 3.9667 2.6010 -0.7032 9 6 5.1969 2.6312 -1.5053 10 1 5.9146 1.9197 -1.0968 11 6 4.8719 2.2538 -2.9520 12 6 5.7870 4.0173 -1.4682 13 1 5.2972 4.7978 -0.9047 14 6 6.9519 4.2893 -2.1536 15 7 7.4671 5.4989 -2.1208 16 14 7.7994 2.9393 -3.1277 17 1 7.2769 2.9294 -4.5177 18 1 9.2629 3.1898 -3.1509 19 1 7.5320 1.6256 -2.4890 20 6 3.3593 1.2640 -0.7213 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.2594 1.8430 1.9482 25 1 2.8565 1.0548 1.9671 26 1 3.0927 3.4607 2.4591 27 1 2.2490 3.8674 0.9447 28 1 4.8797 2.3348 1.1695 29 1 4.7017 4.0281 0.6510 30 1 5.7847 2.2766 -3.5473 31 1 4.4451 1.2511 -2.9788 32 1 4.1542 2.9652 -3.3606 33 1 8.2865 5.6903 -2.6033 34 1 3.2098 0.9471 -1.7533 35 1 4.0194 0.5584 -0.2167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219566538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:18 Heat of formation + Delta-G solvation = -39.725106 kcal Electronic energy + Delta-G solvation = -15109.665823 eV Core-core repulsion = 12721.911625 eV Total energy + Delta-G solvation = -2387.754198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08111 -36.94360 -33.98569 -31.95748 -29.88509 -29.23496 -26.44958 -25.13982 -23.57201 -22.01245 -20.09600 -19.25189 -16.77343 -16.42225 -15.75842 -15.03290 -14.58608 -14.38937 -13.98224 -13.30012 -13.09145 -12.77301 -12.67708 -12.50745 -12.17680 -11.60803 -11.45367 -10.78564 -10.68579 -10.65137 -10.56795 -10.42087 -10.11285 -9.95262 -9.49607 -9.23815 -8.97865 -8.56264 -7.36736 -6.07563 -4.06356 3.27036 3.37412 3.39194 3.79167 4.39624 4.88097 5.08021 5.13363 5.25337 5.32082 5.39092 5.40647 5.60638 5.62432 5.82770 5.91846 6.08783 6.19423 6.20932 6.21542 6.28017 6.43255 6.49105 6.57073 6.71871 6.80780 6.92157 7.26913 7.36617 7.59917 7.94161 8.10113 8.64475 8.98019 9.54403 11.04948 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046788 B = 0.008611 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.302399 B = 3250.775186 C = 3664.048378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.093 3.907 4 H 0.068 0.932 5 C -0.138 4.138 6 C -0.115 4.115 7 C 0.059 3.941 8 N -0.521 5.521 9 C 0.184 3.816 10 H -0.001 1.001 11 C -0.147 4.147 12 C -0.506 4.506 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.269 1.269 20 C 0.054 3.946 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.022 0.978 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 -8.388 4.465 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.035 3.965 4 H 0.086 0.914 5 C -0.176 4.176 6 C -0.153 4.153 7 C -0.069 4.069 8 N -0.247 5.247 9 C 0.077 3.923 10 H 0.016 0.984 11 C -0.204 4.204 12 C -0.545 4.545 13 H 0.102 0.898 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.225 1.225 19 H -0.194 1.194 20 C -0.075 4.075 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.853 -8.116 4.193 14.186 hybrid contribution 0.882 -1.024 -0.257 1.375 sum -9.972 -9.140 3.936 14.088 Atomic orbital electron populations 1.22718 0.81641 1.02126 0.99815 1.87854 1.19189 1.28717 1.95100 1.22160 0.95461 0.83443 0.95461 0.91439 1.22060 1.00479 0.98069 0.96988 1.21589 0.97815 0.96057 0.99820 1.22052 0.94796 1.02149 0.87857 1.61788 1.29458 1.21784 1.11651 1.19662 0.85699 0.97658 0.89303 0.98396 1.22217 1.00364 0.98828 0.99014 1.20978 1.07652 0.94213 1.31607 0.89812 1.24914 0.96790 0.95226 0.96192 1.69879 1.21123 1.19710 1.43010 0.86885 0.77760 0.82964 0.80750 1.20518 1.22477 1.19412 1.22049 0.93449 0.91749 1.00216 0.94379 0.94120 0.90115 0.92554 0.91789 0.91817 0.91325 0.96026 0.88568 0.94005 0.95081 0.92010 0.92606 0.90364 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.47 16 2 O -0.39 -5.89 10.35 -35.23 -0.36 -6.26 16 3 C 0.09 1.46 2.77 -26.65 -0.07 1.38 16 4 H 0.07 1.05 7.79 -51.93 -0.40 0.64 16 5 C -0.14 -2.01 5.62 -26.62 -0.15 -2.16 16 6 C -0.11 -1.78 6.09 -26.66 -0.16 -1.95 16 7 C 0.06 1.16 5.21 -3.84 -0.02 1.14 16 8 N -0.52 -10.95 4.52 -228.08 -1.03 -11.98 16 9 C 0.18 4.42 1.66 -68.87 -0.11 4.31 16 10 H 0.00 -0.04 7.20 -51.93 -0.37 -0.41 16 11 C -0.15 -3.28 8.44 37.16 0.31 -2.97 16 12 C -0.51 -14.08 8.44 -34.44 -0.29 -14.37 16 13 H 0.08 2.50 6.66 -52.48 -0.35 2.15 16 14 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 15 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.89 22.05 24.37 -169.99 -4.14 17.91 16 17 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 20 C 0.05 0.99 4.87 -3.83 -0.02 0.98 16 21 H 0.04 0.38 7.95 -51.93 -0.41 -0.04 16 22 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 2.09 6.04 -51.93 -0.31 1.77 16 30 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 31 H 0.03 0.60 6.27 -51.93 -0.33 0.28 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.43 6.00 -51.93 -0.31 1.12 16 35 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 265.60 15.07 4.00 4.00 Total: -1.00 -29.77 265.60 -5.92 -35.69 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.63 Total: -2.65 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 0.48 Total: -10.24 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.26 Total: -38.46 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.36 Total: -6.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.77 -5.92 -35.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219566538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds