Wall clock time and date at job start Mon Mar 30 2020 20:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99920 * 2 1 4 4 H 1.08994 * 109.53888 * 330.09924 * 3 2 1 5 5 C 1.53126 * 109.50297 * 90.19645 * 3 2 1 6 6 C 1.53099 * 109.15071 * 177.59256 * 5 3 2 7 7 C 1.53034 * 109.29509 * 302.33888 * 6 5 3 8 8 N 1.46847 * 109.51345 * 59.18740 * 7 6 5 9 9 C 1.46898 * 110.99897 * 174.16738 * 8 7 6 10 10 H 1.09002 * 109.47317 * 63.95538 * 9 8 7 11 11 C 1.52998 * 109.46920 * 183.94846 * 9 8 7 12 12 C 1.50696 * 109.47292 * 303.95138 * 9 8 7 13 13 H 1.08005 * 119.99937 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00135 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00079 * 180.02562 * 14 12 9 16 16 Si 1.86803 * 120.00285 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47002 * 90.00093 * 16 14 12 18 18 H 1.48496 * 109.47451 * 210.00166 * 16 14 12 19 19 H 1.48505 * 109.46912 * 330.00535 * 16 14 12 20 20 C 1.46854 * 111.19790 * 298.26320 * 8 7 6 21 21 H 1.09001 * 109.47196 * 299.99869 * 1 2 3 22 22 H 1.08991 * 109.47506 * 60.00174 * 1 2 3 23 23 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.52264 * 297.49919 * 5 3 2 25 25 H 1.09001 * 109.52183 * 57.69204 * 5 3 2 26 26 H 1.09007 * 109.48839 * 182.39531 * 6 5 3 27 27 H 1.09009 * 109.50682 * 62.29317 * 6 5 3 28 28 H 1.09002 * 109.46271 * 299.17460 * 7 6 5 29 29 H 1.08994 * 109.46242 * 179.19760 * 7 6 5 30 30 H 1.09001 * 109.47056 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47418 * 300.00070 * 11 9 8 32 32 H 1.09001 * 109.47020 * 60.00494 * 11 9 8 33 33 H 0.97003 * 120.00163 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.46229 * 181.76227 * 20 8 7 35 35 H 1.09008 * 109.45822 * 301.73281 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0006 -0.5120 5 6 2.2226 1.7704 1.4434 6 6 2.9003 3.1433 1.4342 7 6 4.2237 3.0488 0.6715 8 7 3.9667 2.6010 -0.7032 9 6 5.1969 2.6312 -1.5053 10 1 5.9146 1.9197 -1.0968 11 6 4.8719 2.2538 -2.9520 12 6 5.7870 4.0173 -1.4682 13 1 5.2972 4.7978 -0.9047 14 6 6.9519 4.2893 -2.1536 15 7 7.4671 5.4989 -2.1208 16 14 7.7994 2.9393 -3.1277 17 1 7.2769 2.9294 -4.5177 18 1 9.2629 3.1898 -3.1509 19 1 7.5320 1.6256 -2.4890 20 6 3.3593 1.2640 -0.7213 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.2594 1.8430 1.9482 25 1 2.8565 1.0548 1.9671 26 1 3.0927 3.4607 2.4591 27 1 2.2490 3.8674 0.9447 28 1 4.8797 2.3348 1.1695 29 1 4.7017 4.0281 0.6510 30 1 5.7847 2.2766 -3.5473 31 1 4.4451 1.2511 -2.9788 32 1 4.1542 2.9652 -3.3606 33 1 8.2865 5.6903 -2.6033 34 1 3.2098 0.9471 -1.7533 35 1 4.0194 0.5584 -0.2167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219566538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:17 Heat of formation + Delta-G solvation = -61.409709 kcal Electronic energy + Delta-G solvation = -15110.606138 eV Core-core repulsion = 12721.911625 eV Total energy + Delta-G solvation = -2388.694513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45744 -38.30173 -35.66560 -33.90722 -31.28084 -30.90337 -27.57417 -26.92948 -25.12903 -23.41574 -21.79486 -20.73928 -18.85971 -17.78693 -17.11354 -16.36520 -16.04911 -15.87815 -15.59574 -14.87097 -14.75952 -14.34189 -14.15956 -13.95772 -13.68954 -13.24089 -12.73606 -12.58968 -12.43007 -12.20214 -11.99183 -11.91854 -11.58730 -11.47878 -11.36113 -10.95580 -10.73525 -10.38678 -9.06955 -8.29075 -6.32152 1.29054 1.34334 1.43953 2.30682 2.60334 3.04595 3.41956 3.83513 3.89569 4.10631 4.25449 4.37892 4.47699 4.55460 4.57817 4.60704 4.64033 4.69054 4.73274 4.82152 4.89265 4.96708 5.02835 5.05116 5.09918 5.27077 5.36795 5.45732 5.62847 5.99665 6.24025 6.40607 6.66543 6.74352 7.32541 8.86802 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046788 B = 0.008611 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.302399 B = 3250.775186 C = 3664.048378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.099 3.901 4 H 0.071 0.929 5 C -0.131 4.131 6 C -0.105 4.105 7 C 0.058 3.942 8 N -0.528 5.528 9 C 0.185 3.815 10 H -0.014 1.014 11 C -0.142 4.142 12 C -0.507 4.507 13 H 0.047 0.953 14 C 0.015 3.985 15 N -0.945 5.945 16 Si 0.945 3.055 17 H -0.263 1.263 18 H -0.297 1.297 19 H -0.256 1.256 20 C 0.053 3.947 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 -10.373 4.494 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.041 3.959 4 H 0.089 0.911 5 C -0.169 4.169 6 C -0.143 4.143 7 C -0.070 4.070 8 N -0.254 5.254 9 C 0.077 3.923 10 H 0.004 0.996 11 C -0.200 4.200 12 C -0.545 4.545 13 H 0.066 0.934 14 C -0.182 4.182 15 N -0.585 5.585 16 Si 0.773 3.227 17 H -0.189 1.189 18 H -0.225 1.225 19 H -0.181 1.181 20 C -0.075 4.075 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.118 0.882 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.447 -10.118 4.230 16.589 hybrid contribution 1.289 -0.379 -0.194 1.358 sum -11.158 -10.497 4.036 15.842 Atomic orbital electron populations 1.22977 0.79393 1.03816 1.00819 1.87823 1.21583 1.27953 1.95233 1.21980 0.93922 0.84174 0.95788 0.91093 1.22008 1.01657 0.96774 0.96482 1.21518 0.95386 0.97162 1.00249 1.22040 0.97103 0.99997 0.87826 1.61744 1.27845 1.23743 1.12093 1.19512 0.86791 0.94795 0.91202 0.99639 1.22117 1.00170 1.00536 0.97146 1.21197 1.07565 0.95342 1.30390 0.93439 1.25716 0.97620 0.97413 0.97480 1.70018 1.21943 1.21973 1.44611 0.85907 0.76466 0.80439 0.79910 1.18945 1.22460 1.18067 1.22096 0.94813 0.89770 1.00818 0.93002 0.93473 0.88186 0.89723 0.92074 0.89645 0.91319 0.96571 0.91937 0.94610 0.92046 0.92285 0.92476 0.90206 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.82 113.37 1.23 1.71 16 2 O -0.41 -11.06 10.35 -148.98 -1.54 -12.60 16 3 C 0.10 2.87 2.77 30.65 0.08 2.96 16 4 H 0.07 2.01 7.79 -2.39 -0.02 1.99 16 5 C -0.13 -3.44 5.62 30.67 0.17 -3.27 16 6 C -0.11 -3.10 6.09 30.64 0.19 -2.91 16 7 C 0.06 2.29 5.21 86.32 0.45 2.74 16 8 N -0.53 -22.04 4.52 -875.51 -3.96 -25.99 16 9 C 0.18 8.88 1.66 44.17 0.07 8.95 16 10 H -0.01 -0.69 7.20 -2.39 -0.02 -0.71 16 11 C -0.14 -6.13 8.44 71.98 0.61 -5.52 16 12 C -0.51 -28.97 8.44 25.60 0.22 -28.75 16 13 H 0.05 2.99 6.66 -2.91 -0.02 2.97 16 14 C 0.02 0.89 5.45 84.65 0.46 1.35 16 15 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 16 Si 0.95 45.38 24.37 68.60 1.67 47.05 16 17 H -0.26 -11.97 6.87 99.48 0.68 -11.29 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.26 -11.68 6.53 99.48 0.65 -11.03 16 20 C 0.05 1.88 4.87 86.32 0.42 2.30 16 21 H 0.05 0.82 7.95 -2.39 -0.02 0.80 16 22 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.79 7.95 -2.39 -0.02 1.77 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 2.85 6.04 -2.39 -0.01 2.83 16 30 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 31 H 0.06 2.25 6.27 -2.39 -0.01 2.23 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.08 2.75 6.00 -2.39 -0.01 2.74 16 35 H 0.02 0.81 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -64.80 265.60 1.34 -63.46 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.97 Total: 7.18 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 3.90 Total: -20.45 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.66 Total: -84.63 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.54 Total: -12.60 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -64.80 1.34 -63.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219566538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.049 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds