Wall clock time and date at job start Mon Mar 30 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 114.00048 * 2 1 4 4 H 1.09002 * 109.53767 * 330.09697 * 3 2 1 5 5 C 1.53119 * 109.50672 * 90.19914 * 3 2 1 6 6 C 1.53115 * 109.16650 * 177.59577 * 5 3 2 7 7 C 1.53041 * 109.27757 * 302.34521 * 6 5 3 8 8 H 1.08996 * 109.46260 * 299.16038 * 7 6 5 9 9 C 1.52997 * 109.46335 * 179.19486 * 7 6 5 10 10 N 1.46843 * 109.52066 * 59.17731 * 7 6 5 11 11 C 1.46904 * 110.99657 * 174.16317 * 10 7 6 12 12 C 1.50708 * 109.47033 * 188.88986 * 11 10 7 13 13 H 1.07993 * 119.99693 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99894 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99918 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47188 * 270.00353 * 16 14 12 18 18 H 1.48499 * 109.46687 * 150.00526 * 16 14 12 19 19 H 1.48500 * 109.47008 * 30.00608 * 16 14 12 20 20 C 1.46848 * 111.20102 * 298.25767 * 10 7 6 21 21 H 1.09003 * 109.47058 * 299.99900 * 1 2 3 22 22 H 1.08992 * 109.47326 * 59.99991 * 1 2 3 23 23 H 1.09004 * 109.46695 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.52062 * 297.50409 * 5 3 2 25 25 H 1.08998 * 109.52359 * 57.68501 * 5 3 2 26 26 H 1.09004 * 109.50289 * 62.28519 * 6 5 3 27 27 H 1.09002 * 109.50660 * 182.36592 * 6 5 3 28 28 H 1.09001 * 109.46947 * 293.51964 * 9 7 6 29 29 H 1.09004 * 109.47337 * 53.51604 * 9 7 6 30 30 H 1.08998 * 109.47219 * 173.52228 * 9 7 6 31 31 H 1.08997 * 109.47613 * 68.89105 * 11 10 7 32 32 H 1.09001 * 109.46809 * 308.88336 * 11 10 7 33 33 H 0.96998 * 120.00150 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.46118 * 181.76096 * 20 10 7 35 35 H 1.09004 * 109.45803 * 301.72938 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0006 -0.5121 5 6 2.2227 1.7704 1.4433 6 6 2.9004 3.1434 1.4344 7 6 4.2237 3.0487 0.6715 8 1 4.8797 2.3348 1.1694 9 6 4.8950 4.4233 0.6428 10 7 3.9667 2.6009 -0.7031 11 6 5.1970 2.6311 -1.5053 12 6 4.8595 2.3786 -2.9523 13 1 3.8338 2.2128 -3.2465 14 6 5.8603 2.3603 -3.9005 15 7 7.1094 2.5628 -3.5422 16 14 5.4421 2.0467 -5.6939 17 1 5.4974 0.5881 -5.9673 18 1 6.4213 2.7503 -6.5607 19 1 4.0754 2.5524 -5.9792 20 6 3.3593 1.2640 -0.7213 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.2595 1.8429 1.9482 25 1 2.8565 1.0547 1.9670 26 1 2.2491 3.8675 0.9449 27 1 3.0925 3.4611 2.4593 28 1 4.2932 5.1091 0.0465 29 1 4.9823 4.8064 1.6595 30 1 5.8878 4.3336 0.2017 31 1 5.8804 1.8591 -1.1517 32 1 5.6704 3.6080 -1.4078 33 1 7.3266 2.7253 -2.6109 34 1 3.2098 0.9471 -1.7534 35 1 4.0194 0.5584 -0.2168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687208217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:41 Heat of formation + Delta-G solvation = -56.485255 kcal Electronic energy + Delta-G solvation = -15046.826169 eV Core-core repulsion = 12658.345197 eV Total energy + Delta-G solvation = -2388.480972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13732 -36.96831 -33.63199 -31.73085 -31.41955 -27.36254 -26.35211 -25.28244 -23.73640 -21.68842 -20.77309 -19.25968 -16.82628 -16.23384 -15.69817 -15.03072 -14.42728 -14.17977 -13.71198 -13.62038 -13.24835 -12.89371 -12.58574 -11.99713 -11.63967 -11.54298 -11.35017 -11.25510 -10.88983 -10.69648 -10.47835 -10.40784 -10.34781 -10.08204 -9.82356 -9.18905 -8.61302 -8.33531 -7.32232 -6.34372 -4.02598 3.46112 3.49953 3.65715 3.87339 4.54619 4.90074 5.06001 5.15866 5.23376 5.34164 5.41507 5.46225 5.55473 5.68093 5.74087 5.81661 5.92661 6.01035 6.03316 6.12823 6.24873 6.36365 6.42298 6.54177 6.66546 6.74362 7.06432 7.14449 7.43396 7.83711 8.01355 8.35987 8.61308 8.89922 9.67565 11.04898 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.009668 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.015761 B = 2895.370651 C = 3716.741082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.066 0.934 5 C -0.139 4.139 6 C -0.106 4.106 7 C 0.075 3.925 8 H 0.029 0.971 9 C -0.142 4.142 10 N -0.523 5.523 11 C 0.180 3.820 12 C -0.588 4.588 13 H 0.057 0.943 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 1.074 2.926 17 H -0.288 1.288 18 H -0.285 1.285 19 H -0.288 1.288 20 C 0.071 3.929 21 H 0.036 0.964 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.059 0.941 31 H -0.021 1.021 32 H 0.032 0.968 33 H 0.266 0.734 34 H 0.091 0.909 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 -0.628 8.932 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.084 0.916 5 C -0.176 4.176 6 C -0.144 4.144 7 C -0.034 4.034 8 H 0.047 0.953 9 C -0.200 4.200 10 N -0.249 5.249 11 C 0.055 3.945 12 C -0.626 4.626 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.902 3.098 17 H -0.215 1.215 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.057 4.057 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.078 0.922 31 H -0.004 1.004 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.822 -0.610 7.205 12.196 hybrid contribution -0.303 -0.248 2.001 2.039 sum -10.125 -0.858 9.206 13.711 Atomic orbital electron populations 1.22720 0.81760 1.02135 0.99692 1.87871 1.19089 1.28575 1.95043 1.22222 0.96014 0.83538 0.94966 0.91568 1.22059 1.00424 0.97643 0.97519 1.21566 0.96944 0.96549 0.99362 1.21603 0.94827 0.96410 0.90586 0.95340 1.21854 1.01135 0.96471 1.00501 1.61911 1.30107 1.23882 1.09022 1.19909 0.85587 0.95805 0.93176 1.22012 0.96047 1.52645 0.91932 0.92494 1.25832 0.93177 0.94346 1.05615 1.70767 1.18743 1.45494 1.20199 0.83473 0.75140 0.76593 0.74583 1.21530 1.21046 1.21401 1.21849 0.92197 0.90395 1.01249 0.94563 0.94077 0.90087 0.92435 0.91777 0.91276 0.91938 0.91851 0.93246 0.92209 1.00364 0.95023 0.92336 0.89094 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 101.05 1.09 1.51 16 2 O -0.39 -6.49 10.35 -35.23 -0.36 -6.86 16 3 C 0.09 1.56 2.77 -26.65 -0.07 1.49 16 4 H 0.07 1.13 7.79 -51.93 -0.40 0.73 16 5 C -0.14 -2.08 5.62 -26.61 -0.15 -2.23 16 6 C -0.11 -1.60 5.37 -26.65 -0.14 -1.74 16 7 C 0.07 1.37 2.44 -67.72 -0.17 1.21 16 8 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 9 C -0.14 -2.43 8.56 37.16 0.32 -2.12 16 10 N -0.52 -11.55 4.49 -228.12 -1.02 -12.57 16 11 C 0.18 4.72 3.73 -4.97 -0.02 4.70 16 12 C -0.59 -16.85 8.42 -34.44 -0.29 -17.14 16 13 H 0.06 1.64 7.04 -52.49 -0.37 1.27 16 14 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 15 N -0.92 -28.12 13.65 55.43 0.76 -27.36 16 16 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.51 4.94 -3.83 -0.02 1.49 16 21 H 0.04 0.39 7.95 -51.93 -0.41 -0.02 16 22 H 0.04 0.48 8.09 -51.93 -0.42 0.06 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.12 6.53 -51.93 -0.34 0.78 16 31 H -0.02 -0.60 8.00 -51.93 -0.42 -1.01 16 32 H 0.03 0.85 5.72 -51.93 -0.30 0.56 16 33 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 34 H 0.09 2.11 6.62 -51.93 -0.34 1.77 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 275.90 15.07 4.16 4.16 Total: -1.00 -30.85 275.90 -6.99 -37.84 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.89 Total: -3.29 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 0.45 Total: -12.53 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.27 Total: -39.93 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.36 Total: -6.86 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.85 -6.99 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.646 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds