Wall clock time and date at job start Mon Mar 30 2020 20:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 114.00048 * 2 1 4 4 H 1.09002 * 109.53767 * 330.09697 * 3 2 1 5 5 C 1.53119 * 109.50672 * 90.19914 * 3 2 1 6 6 C 1.53115 * 109.16650 * 177.59577 * 5 3 2 7 7 C 1.53041 * 109.27757 * 302.34521 * 6 5 3 8 8 H 1.08996 * 109.46260 * 299.16038 * 7 6 5 9 9 C 1.52997 * 109.46335 * 179.19486 * 7 6 5 10 10 N 1.46843 * 109.52066 * 59.17731 * 7 6 5 11 11 C 1.46904 * 110.99657 * 174.16317 * 10 7 6 12 12 C 1.50708 * 109.47033 * 188.88986 * 11 10 7 13 13 H 1.07993 * 119.99693 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99894 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99918 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47188 * 270.00353 * 16 14 12 18 18 H 1.48499 * 109.46687 * 150.00526 * 16 14 12 19 19 H 1.48500 * 109.47008 * 30.00608 * 16 14 12 20 20 C 1.46848 * 111.20102 * 298.25767 * 10 7 6 21 21 H 1.09003 * 109.47058 * 299.99900 * 1 2 3 22 22 H 1.08992 * 109.47326 * 59.99991 * 1 2 3 23 23 H 1.09004 * 109.46695 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.52062 * 297.50409 * 5 3 2 25 25 H 1.08998 * 109.52359 * 57.68501 * 5 3 2 26 26 H 1.09004 * 109.50289 * 62.28519 * 6 5 3 27 27 H 1.09002 * 109.50660 * 182.36592 * 6 5 3 28 28 H 1.09001 * 109.46947 * 293.51964 * 9 7 6 29 29 H 1.09004 * 109.47337 * 53.51604 * 9 7 6 30 30 H 1.08998 * 109.47219 * 173.52228 * 9 7 6 31 31 H 1.08997 * 109.47613 * 68.89105 * 11 10 7 32 32 H 1.09001 * 109.46809 * 308.88336 * 11 10 7 33 33 H 0.96998 * 120.00150 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.46118 * 181.76096 * 20 10 7 35 35 H 1.09004 * 109.45803 * 301.72938 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0006 -0.5121 5 6 2.2227 1.7704 1.4433 6 6 2.9004 3.1434 1.4344 7 6 4.2237 3.0487 0.6715 8 1 4.8797 2.3348 1.1694 9 6 4.8950 4.4233 0.6428 10 7 3.9667 2.6009 -0.7031 11 6 5.1970 2.6311 -1.5053 12 6 4.8595 2.3786 -2.9523 13 1 3.8338 2.2128 -3.2465 14 6 5.8603 2.3603 -3.9005 15 7 7.1094 2.5628 -3.5422 16 14 5.4421 2.0467 -5.6939 17 1 5.4974 0.5881 -5.9673 18 1 6.4213 2.7503 -6.5607 19 1 4.0754 2.5524 -5.9792 20 6 3.3593 1.2640 -0.7213 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.2595 1.8429 1.9482 25 1 2.8565 1.0547 1.9670 26 1 2.2491 3.8675 0.9449 27 1 3.0925 3.4611 2.4593 28 1 4.2932 5.1091 0.0465 29 1 4.9823 4.8064 1.6595 30 1 5.8878 4.3336 0.2017 31 1 5.8804 1.8591 -1.1517 32 1 5.6704 3.6080 -1.4078 33 1 7.3266 2.7253 -2.6109 34 1 3.2098 0.9471 -1.7534 35 1 4.0194 0.5584 -0.2168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687208217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:41 Heat of formation + Delta-G solvation = -77.992758 kcal Electronic energy + Delta-G solvation = -15047.758805 eV Core-core repulsion = 12658.345197 eV Total energy + Delta-G solvation = -2389.413607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60697 -38.36195 -35.60288 -33.46438 -32.88953 -28.86338 -28.03453 -26.60311 -25.54840 -23.47566 -22.23911 -20.75515 -18.94015 -17.64934 -17.13375 -16.33717 -15.86733 -15.85979 -15.62767 -15.01162 -14.66846 -14.50533 -14.13624 -13.64327 -13.27919 -13.00241 -12.87432 -12.81337 -12.54827 -12.46753 -11.93806 -11.88841 -11.87152 -11.70133 -11.30377 -10.79914 -10.57028 -10.41913 -9.18130 -8.69551 -6.39228 1.51321 1.60705 1.79096 2.51723 2.58407 3.13666 3.37514 3.74455 3.82601 3.89839 4.08074 4.26013 4.35337 4.52575 4.54434 4.55772 4.60432 4.66284 4.77704 4.84135 4.88222 4.93082 4.94368 5.01117 5.06433 5.18534 5.21403 5.37702 5.77536 5.96731 6.21572 6.37322 6.42074 6.64876 7.40361 8.69468 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.009668 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.015761 B = 2895.370651 C = 3716.741082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.100 3.900 4 H 0.069 0.931 5 C -0.132 4.132 6 C -0.097 4.097 7 C 0.066 3.934 8 H 0.018 0.982 9 C -0.137 4.137 10 N -0.526 5.526 11 C 0.192 3.808 12 C -0.599 4.599 13 H 0.052 0.948 14 C -0.038 4.038 15 N -0.937 5.937 16 Si 1.122 2.878 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.269 1.269 20 C 0.072 3.928 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.032 0.968 31 H -0.053 1.053 32 H 0.022 0.978 33 H 0.253 0.747 34 H 0.058 0.942 35 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -0.305 9.834 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.042 3.958 4 H 0.087 0.913 5 C -0.170 4.170 6 C -0.135 4.135 7 C -0.043 4.043 8 H 0.036 0.964 9 C -0.194 4.194 10 N -0.252 5.252 11 C 0.065 3.935 12 C -0.638 4.638 13 H 0.070 0.930 14 C -0.235 4.235 15 N -0.575 5.575 16 Si 0.943 3.057 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.056 4.056 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.118 0.882 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.051 0.949 31 H -0.036 1.036 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -11.997 -0.286 8.144 14.503 hybrid contribution 0.341 -0.384 1.777 1.850 sum -11.656 -0.670 9.921 15.321 Atomic orbital electron populations 1.22992 0.79211 1.03898 1.00875 1.87833 1.21826 1.28128 1.95257 1.22015 0.93434 0.84172 0.96150 0.91278 1.22027 1.02055 0.97211 0.95717 1.21552 0.94502 0.96861 1.00585 1.21858 0.97306 0.96507 0.88589 0.96403 1.21818 0.99249 0.95762 1.02593 1.61887 1.27754 1.24367 1.11236 1.19615 0.86832 0.93953 0.93056 1.22322 0.95844 1.52217 0.93378 0.92993 1.27405 0.92613 0.93372 1.10085 1.70898 1.19805 1.47383 1.19408 0.82875 0.75887 0.77361 0.69593 1.20039 1.20517 1.19417 1.21796 0.94526 0.89421 0.99866 0.92430 0.93770 0.88169 0.89088 0.92287 0.90718 0.88466 0.92320 0.89325 0.94924 1.03576 0.96054 0.93770 0.92308 0.97412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.82 113.37 1.23 1.80 16 2 O -0.41 -13.18 10.35 -148.98 -1.54 -14.73 16 3 C 0.10 3.33 2.77 30.65 0.08 3.42 16 4 H 0.07 2.24 7.79 -2.39 -0.02 2.22 16 5 C -0.13 -3.56 5.62 30.67 0.17 -3.39 16 6 C -0.10 -2.61 5.37 30.65 0.16 -2.45 16 7 C 0.07 2.37 2.44 44.94 0.11 2.48 16 8 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 9 C -0.14 -4.57 8.56 71.98 0.62 -3.96 16 10 N -0.53 -23.73 4.49 -875.63 -3.93 -27.66 16 11 C 0.19 10.51 3.73 85.56 0.32 10.83 16 12 C -0.60 -35.43 8.42 25.60 0.22 -35.22 16 13 H 0.05 3.06 7.04 -2.91 -0.02 3.04 16 14 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 15 N -0.94 -59.19 13.65 21.45 0.29 -58.90 16 16 Si 1.12 51.80 29.90 68.60 2.05 53.85 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.07 3.14 4.94 86.33 0.43 3.56 16 21 H 0.06 1.02 7.95 -2.39 -0.02 1.00 16 22 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.09 1.91 7.95 -2.39 -0.02 1.89 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.03 1.24 6.53 -2.39 -0.02 1.22 16 31 H -0.05 -3.19 8.00 -2.39 -0.02 -3.21 16 32 H 0.02 1.21 5.72 -2.39 -0.01 1.20 16 33 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 34 H 0.06 2.86 6.62 -2.39 -0.02 2.84 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -68.78 275.90 1.80 -66.97 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.14 Total: 5.16 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.80 Total: -24.70 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.64 Total: -86.56 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.54 Total: -14.73 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -68.78 1.80 -66.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687208217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.019 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds