Wall clock time and date at job start Mon Mar 30 2020 20:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47324 * 2 1 4 4 N 1.46505 * 109.46919 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99440 * 271.16150 * 4 3 2 6 6 H 1.07997 * 120.00078 * 326.01561 * 5 4 3 7 7 C 1.38817 * 119.99536 * 146.02207 * 5 4 3 8 8 N 1.31618 * 119.99927 * 336.55280 * 7 5 4 9 9 Si 1.86805 * 119.99652 * 156.55210 * 7 5 4 10 10 H 1.48499 * 109.47362 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46834 * 120.00197 * 9 7 5 12 12 H 1.48500 * 109.46807 * 239.99405 * 9 7 5 13 13 C 1.46497 * 120.00195 * 91.16611 * 4 3 2 14 14 C 1.53003 * 109.47052 * 89.99840 * 13 4 3 15 15 O 1.42891 * 112.84995 * 53.80364 * 14 13 4 16 16 C 1.53784 * 113.61398 * 282.49444 * 14 13 4 17 17 C 1.53779 * 87.08038 * 220.02298 * 16 14 13 18 18 C 1.53781 * 87.08214 * 25.43357 * 17 16 14 19 19 H 1.09003 * 109.47489 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47280 * 300.00214 * 1 2 3 21 21 H 1.09006 * 109.46607 * 59.99963 * 1 2 3 22 22 H 1.09000 * 109.47280 * 239.99786 * 2 1 3 23 23 H 1.09000 * 109.46847 * 120.00384 * 2 1 3 24 24 H 1.09000 * 109.46884 * 299.99520 * 3 2 1 25 25 H 1.08999 * 109.47311 * 60.00198 * 3 2 1 26 26 H 0.96995 * 119.99464 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47083 * 209.99496 * 13 4 3 28 28 H 1.08999 * 109.47293 * 329.99750 * 13 4 3 29 29 H 0.96698 * 114.00407 * 309.66305 * 15 14 13 30 30 H 1.09002 * 113.61125 * 334.56853 * 16 14 13 31 31 H 1.08999 * 113.60926 * 105.47205 * 16 14 13 32 32 H 1.09000 * 113.61338 * 270.88156 * 17 16 14 33 33 H 1.09000 * 113.69317 * 139.99558 * 17 16 14 34 34 H 1.09001 * 113.61167 * 220.01857 * 18 17 16 35 35 H 1.08998 * 113.69159 * 89.12828 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1901 1.4181 1.1848 6 1 3.7888 1.9233 2.0509 7 6 5.4005 0.7441 1.2732 8 7 5.6770 -0.2256 0.4274 9 14 6.6367 1.2137 2.5927 10 1 6.0899 2.3265 3.4099 11 1 6.8991 0.0408 3.4649 12 1 7.9041 1.6472 1.9516 13 6 4.2371 1.4683 -1.2693 14 6 4.4920 2.9196 -1.6815 15 8 5.1386 3.6811 -0.6598 16 6 3.2593 3.6145 -2.2836 17 6 4.2172 4.2612 -3.2980 18 6 5.1494 3.0607 -3.0645 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8900 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 6.5226 -0.6967 0.4895 27 1 5.1895 0.9519 -1.1499 28 1 3.6477 0.9702 -2.0391 29 1 4.7158 3.6149 0.2073 30 1 2.5462 2.9247 -2.7350 31 1 2.7889 4.3303 -1.6095 32 1 4.6345 5.2101 -2.9610 33 1 3.8150 4.3114 -4.3099 34 1 6.2049 3.3295 -3.0208 35 1 4.9542 2.2188 -3.7287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:48 Heat of formation + Delta-G solvation = -38.341959 kcal Electronic energy + Delta-G solvation = -15350.446085 eV Core-core repulsion = 12962.751865 eV Total energy + Delta-G solvation = -2387.694220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43474 -37.39378 -35.22456 -34.48365 -32.46497 -28.93674 -27.33256 -26.46089 -24.59155 -22.97988 -21.52916 -20.33985 -18.80716 -17.25557 -16.55474 -16.27195 -15.97607 -15.67589 -15.44080 -14.86955 -14.16048 -13.94272 -13.61465 -13.38703 -13.07033 -12.86573 -12.71539 -12.49450 -12.25997 -12.08763 -11.88646 -11.78876 -11.73925 -11.64110 -11.32413 -10.88836 -10.52421 -10.34045 -8.55798 -7.79210 -5.37386 1.44668 1.50636 1.57088 2.52341 3.26724 3.44515 3.59606 3.86637 4.00198 4.20702 4.28681 4.38403 4.48948 4.69132 4.82578 4.83666 4.84348 4.90411 4.98306 5.01215 5.08758 5.14551 5.23658 5.28076 5.47178 5.53332 5.56234 5.63294 5.71194 5.86232 6.47882 7.03858 7.20260 7.90856 8.40527 9.15201 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.015379 C = 0.009715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.401760 B = 1820.171985 C = 2881.402575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.144 3.856 4 N -0.596 5.596 5 C -0.261 4.261 6 H 0.064 0.936 7 C -0.031 4.031 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.298 1.298 13 C 0.132 3.868 14 C 0.085 3.915 15 O -0.563 6.563 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.133 4.133 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.382 0.618 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 5.453 -5.363 10.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.317 5.317 5 C -0.391 4.391 6 H 0.081 0.919 7 C -0.229 4.229 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.187 1.187 11 H -0.224 1.224 12 H -0.225 1.225 13 C 0.006 3.994 14 C 0.041 3.959 15 O -0.371 6.371 16 C -0.189 4.189 17 C -0.157 4.157 18 C -0.171 4.171 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.188 5.520 -5.841 10.143 hybrid contribution 0.702 -0.514 1.273 1.542 sum -5.485 5.006 -4.568 8.719 Atomic orbital electron populations 1.21661 0.94209 1.01563 1.02049 1.21958 0.96127 0.99773 0.99505 1.21119 0.83700 0.94013 0.99275 1.44068 1.00624 1.85107 1.01863 1.19293 1.02839 1.26052 0.90925 0.91859 1.25648 1.02248 0.95281 0.99687 1.70113 1.23532 1.21533 1.40733 0.85506 0.79628 0.77682 0.79383 1.18702 1.22382 1.22527 1.21358 0.98359 0.93417 0.86298 1.22957 0.93144 0.92183 0.87573 1.86163 1.58059 1.70732 1.22103 1.23468 0.96871 0.99794 0.98720 1.22667 0.96592 0.96827 0.99605 1.23059 0.99342 0.99670 0.95009 0.92797 0.92436 0.91828 0.94846 0.95311 0.92541 0.93903 0.94300 0.91765 0.94813 0.76764 0.89352 0.92040 0.90750 0.89501 0.92488 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 16 2 C -0.13 -5.12 6.26 30.59 0.19 -4.93 16 3 C 0.14 5.69 5.63 86.38 0.49 6.18 16 4 N -0.60 -28.00 2.20 -702.00 -1.54 -29.54 16 5 C -0.26 -13.63 7.83 84.03 0.66 -12.97 16 6 H 0.06 3.27 7.93 -2.91 -0.02 3.25 16 7 C -0.03 -1.69 4.94 84.86 0.42 -1.27 16 8 N -0.91 -53.39 11.35 21.65 0.25 -53.15 16 9 Si 0.95 45.01 29.61 68.60 2.03 47.04 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 13 C 0.13 6.09 4.90 86.38 0.42 6.52 16 14 C 0.08 3.35 1.53 -10.27 -0.02 3.34 16 15 O -0.56 -24.95 13.34 -148.98 -1.99 -26.94 16 16 C -0.15 -4.80 6.61 31.12 0.21 -4.59 16 17 C -0.12 -3.39 8.02 31.12 0.25 -3.14 16 18 C -0.13 -4.48 7.47 31.12 0.23 -4.25 16 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.98 6.84 -2.39 -0.02 1.96 16 25 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.06 3.54 5.33 -2.39 -0.01 3.53 16 28 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 29 H 0.38 17.15 7.07 -74.06 -0.52 16.63 16 30 H 0.09 2.60 7.69 -2.39 -0.02 2.58 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.99 8.10 -2.39 -0.02 2.97 16 Total: -1.00 -59.65 281.51 2.84 -56.81 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.52 Total: 24.05 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.56 Total: -18.27 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.30 Total: -82.69 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.99 Total: -26.94 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -59.65 2.84 -56.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.471 kcal (2) G-P(sol) polarization free energy of solvation -59.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds