Wall clock time and date at job start Mon Mar 30 2020 20:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46294 * 2 1 4 4 C 1.53041 * 109.46479 * 240.02396 * 2 1 3 5 5 C 1.53112 * 109.28060 * 180.81648 * 4 2 1 6 6 C 1.53115 * 109.16265 * 57.65310 * 5 4 2 7 7 H 1.09000 * 109.50482 * 62.32769 * 6 5 4 8 8 C 1.52997 * 109.50522 * 182.40293 * 6 5 4 9 9 O 1.42893 * 109.47222 * 294.99952 * 8 6 5 10 10 C 1.53037 * 109.27937 * 302.34988 * 6 5 4 11 11 N 1.46843 * 109.52568 * 59.17561 * 10 6 5 12 12 C 1.46901 * 111.00052 * 174.16442 * 11 10 6 13 13 C 1.50709 * 109.47141 * 293.04196 * 12 11 10 14 14 H 1.08000 * 119.99413 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99848 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99950 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00516 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47152 * 89.99847 * 17 15 13 19 19 H 1.48493 * 109.47182 * 209.99935 * 17 15 13 20 20 H 1.48505 * 109.46761 * 330.00148 * 17 15 13 21 21 H 1.08998 * 109.47642 * 186.98215 * 1 2 3 22 22 H 1.09002 * 109.47359 * 306.98128 * 1 2 3 23 23 H 1.09000 * 109.47010 * 66.98126 * 1 2 3 24 24 H 1.09000 * 109.49742 * 300.75831 * 4 2 1 25 25 H 1.08998 * 109.50317 * 60.83295 * 4 2 1 26 26 H 1.08998 * 109.52468 * 177.55995 * 5 4 2 27 27 H 1.08999 * 109.52344 * 297.75240 * 5 4 2 28 28 H 1.09003 * 109.47074 * 55.00676 * 8 6 5 29 29 H 1.09006 * 109.46915 * 174.99883 * 8 6 5 30 30 H 0.96709 * 113.99850 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46394 * 179.19683 * 10 6 5 32 32 H 1.09004 * 109.46137 * 299.15889 * 10 6 5 33 33 H 1.09001 * 109.47356 * 53.04127 * 12 11 10 34 34 H 1.08996 * 109.47266 * 173.04006 * 12 11 10 35 35 H 0.96993 * 120.00289 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7364 -1.2354 6 6 4.0545 -1.4192 0.0469 7 1 3.7127 -2.4541 0.0593 8 6 5.5833 -1.3856 0.0982 9 8 6.1131 -2.1716 -0.9711 10 6 3.4862 -0.6780 1.2592 11 7 2.0190 -0.6919 1.1994 12 6 1.4370 -0.1106 2.4165 13 6 1.7369 -1.0037 3.5928 14 1 2.3036 -1.9120 3.4504 15 6 1.2888 -0.6606 4.8507 16 7 1.5500 -1.4403 5.8772 17 14 0.3092 0.9108 5.0970 18 1 -1.1381 0.6230 4.9311 19 1 0.5556 1.4386 6.4629 20 1 0.7316 1.9198 4.0926 21 1 -0.3634 -1.0200 0.1249 22 1 -0.3634 0.6182 0.8209 23 1 -0.3633 0.4019 -0.9458 24 1 1.6657 -1.7447 -1.2576 25 1 1.6891 -0.1986 -2.1399 26 1 3.9379 -1.2866 -2.1018 27 1 3.9458 0.2866 -1.2669 28 1 5.9277 -0.3563 -0.0021 29 1 5.9238 -1.7914 1.0508 30 1 7.0794 -2.1953 -1.0005 31 1 3.8171 -1.1703 2.1737 32 1 3.8402 0.3529 1.2534 33 1 1.8676 0.8756 2.5900 34 1 0.3576 -0.0195 2.2954 35 1 1.2345 -1.1992 6.7621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692044230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:57 Heat of formation + Delta-G solvation = -60.293627 kcal Electronic energy + Delta-G solvation = -14990.727234 eV Core-core repulsion = 12602.081118 eV Total energy + Delta-G solvation = -2388.646116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97487 -36.63548 -33.62169 -32.55614 -31.66580 -27.98504 -27.39381 -24.09292 -23.40190 -21.27275 -19.95005 -19.18097 -17.20475 -16.73538 -15.20340 -14.92183 -14.61345 -14.18276 -13.84961 -13.36346 -13.27244 -12.83355 -12.39487 -12.19043 -11.82376 -11.47130 -11.44953 -11.11694 -10.79220 -10.63858 -10.42151 -10.28154 -10.10070 -9.84396 -9.77313 -9.50309 -9.19526 -8.54368 -7.31080 -6.04069 -4.00662 3.28300 3.35804 3.37855 4.27471 4.42732 4.83588 5.09702 5.19811 5.23406 5.28836 5.47497 5.64349 5.70975 5.74797 5.92365 5.95998 6.03084 6.10099 6.14345 6.30644 6.34516 6.47647 6.54532 6.63359 6.74209 6.79128 6.92964 7.04328 7.63518 7.71137 7.97215 8.12339 8.69141 9.04920 9.58137 11.09136 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.009268 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.901946 B = 3020.554102 C = 3668.004001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.027 0.973 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.086 4.086 7 H 0.084 0.916 8 C 0.081 3.919 9 O -0.574 6.574 10 C 0.073 3.927 11 N -0.521 5.521 12 C 0.158 3.842 13 C -0.507 4.507 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.373 0.627 31 H 0.089 0.911 32 H 0.019 0.981 33 H -0.015 1.015 34 H 0.033 0.967 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 3.249 -12.652 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 H 0.044 0.956 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.105 4.105 7 H 0.102 0.898 8 C 0.003 3.997 9 O -0.378 6.378 10 C -0.055 4.055 11 N -0.245 5.245 12 C 0.032 3.968 13 C -0.545 4.545 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.700 3.300 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.193 1.193 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.219 0.781 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.003 0.997 34 H 0.050 0.950 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.810 2.667 -12.595 13.426 hybrid contribution 0.323 1.820 0.573 1.936 sum 4.133 4.487 -12.021 13.481 Atomic orbital electron populations 1.21888 0.95017 1.02769 1.00555 1.21589 0.95148 0.94871 0.91626 0.95557 1.21619 0.95324 1.01361 0.96431 1.21531 0.95620 0.99706 0.97688 1.21206 0.91996 1.01687 0.95577 0.89783 1.22217 0.94774 0.93569 0.89133 1.86479 1.25185 1.73469 1.52707 1.21868 0.88640 0.97427 0.97607 1.61836 1.05822 1.54778 1.02103 1.20260 0.95113 0.93565 0.87895 1.21060 1.35064 1.08505 0.89910 0.90157 1.24893 0.95944 0.96548 0.95972 1.69894 1.46784 1.37642 0.99730 0.86896 0.81035 0.84521 0.77548 1.20114 1.21228 1.19311 0.91587 0.92538 0.93218 0.91229 0.92428 0.91798 0.93056 0.94086 0.93316 0.78079 0.89254 0.96304 0.99686 0.94950 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.55 37.16 0.32 -2.07 16 2 C 0.08 1.36 2.44 -67.72 -0.17 1.19 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -1.66 5.37 -26.65 -0.14 -1.81 16 5 C -0.11 -1.61 5.15 -26.61 -0.14 -1.74 16 6 C -0.09 -1.41 2.59 -90.54 -0.23 -1.64 16 7 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 8 C 0.08 1.12 6.43 37.16 0.24 1.36 16 9 O -0.57 -7.43 13.24 -35.23 -0.47 -7.90 16 10 C 0.07 1.42 4.58 -3.84 -0.02 1.40 16 11 N -0.52 -11.07 4.47 -228.12 -1.02 -12.09 16 12 C 0.16 3.86 3.53 -4.97 -0.02 3.84 16 13 C -0.51 -14.44 8.99 -34.44 -0.31 -14.75 16 14 H 0.08 2.49 7.45 -52.49 -0.39 2.10 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 17 Si 0.87 21.58 27.47 -169.99 -4.67 16.92 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.06 0.98 6.51 -51.93 -0.34 0.65 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.37 2.97 9.12 45.56 0.42 3.38 16 31 H 0.09 1.93 6.78 -51.93 -0.35 1.58 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H -0.01 -0.36 7.17 -51.93 -0.37 -0.74 16 34 H 0.03 0.79 5.18 -51.93 -0.27 0.52 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -31.31 272.84 -6.95 -38.26 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.11 Total: -0.05 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.57 Total: -12.35 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.25 Total: -38.99 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.47 Total: -7.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.31 -6.95 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.034 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds