Wall clock time and date at job start Mon Mar 30 2020 20:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.45180 * 2 1 4 4 C 1.53166 * 109.45085 * 119.94877 * 2 1 3 5 5 C 1.53120 * 109.20873 * 60.88230 * 4 2 1 6 6 C 1.53123 * 109.21163 * 57.62805 * 5 4 2 7 7 H 1.08996 * 109.50077 * 62.25431 * 6 5 4 8 8 C 1.52995 * 109.50232 * 182.37525 * 6 5 4 9 9 O 1.42904 * 109.46935 * 294.99812 * 8 6 5 10 10 C 1.53037 * 109.27398 * 302.31409 * 6 5 4 11 11 N 1.46845 * 109.46170 * 240.03261 * 2 1 3 12 12 C 1.46900 * 111.00045 * 65.82164 * 11 2 1 13 13 C 1.50700 * 109.47456 * 169.74895 * 12 11 2 14 14 H 1.08002 * 119.99391 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00581 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99512 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00421 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47070 * 90.00302 * 17 15 13 19 19 H 1.48503 * 109.47343 * 210.00088 * 17 15 13 20 20 H 1.48497 * 109.47245 * 330.00266 * 17 15 13 21 21 H 1.08997 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46881 * 299.96986 * 1 2 3 23 23 H 1.08998 * 109.47042 * 59.96423 * 1 2 3 24 24 H 1.09004 * 109.59002 * 300.93612 * 4 2 1 25 25 H 1.08997 * 109.49280 * 180.77472 * 4 2 1 26 26 H 1.09002 * 109.52427 * 297.69078 * 5 4 2 27 27 H 1.08995 * 109.52208 * 177.56397 * 5 4 2 28 28 H 1.08999 * 109.47348 * 54.99609 * 8 6 5 29 29 H 1.09001 * 109.47063 * 175.00518 * 8 6 5 30 30 H 0.96705 * 113.99700 * 180.02562 * 9 8 6 31 31 H 1.09006 * 109.45986 * 179.19524 * 10 6 5 32 32 H 1.08996 * 109.46288 * 299.15727 * 10 6 5 33 33 H 1.09004 * 109.47213 * 289.74248 * 12 11 2 34 34 H 1.08999 * 109.47347 * 49.74397 * 12 11 2 35 35 H 0.97007 * 119.99940 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0401 -0.7210 1.2514 5 6 1.5444 -2.1697 1.2354 6 6 2.0269 -2.8532 -0.0470 7 1 3.1166 -2.8750 -0.0598 8 6 1.4858 -4.2833 -0.0983 9 8 2.0505 -5.0448 0.9711 10 6 1.5173 -2.0703 -1.2592 11 7 2.0193 -0.6916 -1.1994 12 6 1.6651 0.0508 -2.4165 13 6 2.3898 -0.5437 -3.5965 14 1 3.0480 -1.3884 -3.4562 15 6 2.2125 -0.0094 -4.8551 16 7 1.4113 1.0195 -5.0258 17 14 3.1114 -0.7459 -6.3176 18 1 2.2771 -1.8140 -6.9247 19 1 3.3689 0.3139 -7.3254 20 1 4.4026 -1.3233 -5.8654 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5134 0.8903 23 1 -0.3633 0.5144 -0.8897 24 1 1.6640 -0.2176 2.1421 25 1 3.1299 -0.7094 1.2590 26 1 0.4549 -2.1823 1.2671 27 1 1.9401 -2.6996 2.1017 28 1 0.4006 -4.2651 0.0023 29 1 1.7549 -4.7397 -1.0508 30 1 1.7514 -5.9640 1.0000 31 1 1.8711 -2.5463 -2.1738 32 1 0.4274 -2.0607 -1.2533 33 1 0.5894 -0.0131 -2.5811 34 1 1.9536 1.0957 -2.3017 35 1 1.2863 1.3952 -5.9114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692044232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:02 Heat of formation + Delta-G solvation = -62.707416 kcal Electronic energy + Delta-G solvation = -15065.290006 eV Core-core repulsion = 12676.539221 eV Total energy + Delta-G solvation = -2388.750785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.15464 -36.60572 -33.56106 -32.21840 -31.43657 -27.74215 -26.55864 -24.73837 -23.61988 -21.43837 -20.48938 -18.18360 -17.02706 -16.30385 -15.49564 -14.80943 -14.35573 -14.28998 -14.12257 -13.36146 -12.70618 -12.60209 -12.29317 -12.18319 -11.84852 -11.68733 -11.18559 -10.89990 -10.74835 -10.61233 -10.46290 -10.11135 -10.05576 -9.89074 -9.71838 -9.47304 -9.10246 -8.41638 -7.12390 -6.01065 -4.02094 3.31969 3.38447 3.43179 4.31579 4.45034 4.98180 5.17381 5.25924 5.34627 5.34971 5.53668 5.67204 5.75643 5.80981 5.95700 5.98960 6.15161 6.17148 6.22127 6.35355 6.43063 6.47751 6.65508 6.68368 6.82106 6.92666 7.36147 7.42444 7.70986 7.83853 8.14473 8.27390 8.61125 9.06071 9.62003 11.09692 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.009025 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.499525 B = 3101.740874 C = 3742.587193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.086 4.086 7 H 0.081 0.919 8 C 0.081 3.919 9 O -0.574 6.574 10 C 0.070 3.930 11 N -0.528 5.528 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.373 0.627 31 H 0.081 0.919 32 H 0.025 0.975 33 H -0.006 1.006 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -7.485 10.283 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.032 4.032 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.105 4.105 7 H 0.099 0.901 8 C 0.003 3.997 9 O -0.378 6.378 10 C -0.058 4.058 11 N -0.252 5.252 12 C 0.069 3.931 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.047 0.953 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.073 -6.785 10.276 12.361 hybrid contribution -0.843 -0.752 -1.146 1.609 sum -1.916 -7.537 9.130 11.993 Atomic orbital electron populations 1.22489 0.98723 1.01658 1.01510 1.21666 0.92080 0.97992 0.91417 0.90818 1.21611 1.01134 0.95295 0.96696 1.21541 0.99943 0.95617 0.97406 1.21215 1.01776 0.91536 0.95931 0.90070 1.22236 0.96114 0.92405 0.88959 1.86489 1.72321 1.26272 1.52750 1.21856 0.96475 0.90637 0.96869 1.62157 1.58744 1.01317 1.03014 1.19707 0.94529 0.93668 0.85240 1.21195 1.26386 1.15560 0.91386 0.91920 1.24986 0.95555 0.95127 0.98981 1.69963 1.37476 1.23611 1.22836 0.86525 0.80167 0.78682 0.82215 1.20810 1.21268 1.19761 0.92576 0.93376 0.92191 0.92531 0.91549 0.92703 0.92148 0.94079 0.93530 0.78166 0.90028 0.95725 0.98852 0.95267 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.17 8.18 37.16 0.30 -2.87 16 2 C 0.08 1.43 2.92 -67.66 -0.20 1.24 16 3 H 0.07 1.39 8.01 -51.93 -0.42 0.98 16 4 C -0.11 -1.71 5.63 -26.58 -0.15 -1.86 16 5 C -0.11 -1.63 4.84 -26.61 -0.13 -1.76 16 6 C -0.09 -1.41 2.59 -90.54 -0.23 -1.64 16 7 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 8 C 0.08 1.11 6.43 37.16 0.24 1.35 16 9 O -0.57 -7.42 13.24 -35.23 -0.47 -7.89 16 10 C 0.07 1.37 4.28 -3.83 -0.02 1.35 16 11 N -0.53 -11.52 4.59 -228.04 -1.05 -12.56 16 12 C 0.19 5.05 4.18 -4.98 -0.02 5.03 16 13 C -0.51 -14.28 8.43 -34.44 -0.29 -14.57 16 14 H 0.06 1.75 7.14 -52.49 -0.37 1.38 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H 0.06 0.94 4.80 -51.93 -0.25 0.69 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.15 6.78 -51.93 -0.35 0.80 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 27 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.37 2.95 9.12 45.56 0.42 3.37 16 31 H 0.08 1.73 6.72 -51.93 -0.35 1.38 16 32 H 0.02 0.48 6.19 -51.93 -0.32 0.16 16 33 H -0.01 -0.17 6.97 -51.93 -0.36 -0.54 16 34 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 270.24 15.07 4.07 4.07 Total: -1.00 -30.62 270.24 -7.16 -37.78 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.84 Total: 0.25 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.59 Total: -12.27 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.31 Total: -38.65 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.47 Total: -7.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.62 -7.16 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692044232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.926 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds