Wall clock time and date at job start Mon Mar 30 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47268 * 2 1 4 4 N 1.46903 * 109.46573 * 119.99812 * 2 1 3 5 5 C 1.46891 * 111.00009 * 69.60919 * 4 2 1 6 6 C 1.50696 * 109.47429 * 75.34618 * 5 4 2 7 7 H 1.07998 * 119.99972 * 355.13826 * 6 5 4 8 8 C 1.37877 * 120.00051 * 175.13579 * 6 5 4 9 9 N 1.31516 * 120.00047 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00059 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47314 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.47024 * 299.99870 * 10 8 6 13 13 H 1.48494 * 109.47124 * 59.99881 * 10 8 6 14 14 C 1.46906 * 111.00157 * 305.64746 * 4 2 1 15 15 H 1.08997 * 112.84426 * 48.81134 * 14 4 2 16 16 C 1.53780 * 113.61454 * 277.50384 * 14 4 2 17 17 C 1.53784 * 87.07729 * 220.01642 * 16 14 4 18 18 C 1.53776 * 113.61261 * 180.02562 * 14 4 2 19 19 H 1.08999 * 113.61668 * 25.35483 * 18 14 4 20 20 O 1.42897 * 113.61628 * 254.53183 * 18 14 4 21 21 H 1.09002 * 109.47496 * 300.00200 * 1 2 3 22 22 H 1.09002 * 109.47137 * 60.00208 * 1 2 3 23 23 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47216 * 239.99549 * 2 1 3 25 25 H 1.08995 * 109.47047 * 172.88088 * 3 2 1 26 26 H 1.09005 * 109.46588 * 292.87823 * 3 2 1 27 27 H 1.09001 * 109.47261 * 52.87902 * 3 2 1 28 28 H 1.09003 * 109.47230 * 315.33994 * 5 4 2 29 29 H 1.09005 * 109.46762 * 195.34440 * 5 4 2 30 30 H 0.97005 * 120.00096 * 180.02562 * 9 8 6 31 31 H 1.08997 * 113.61548 * 334.56716 * 16 14 4 32 32 H 1.09001 * 113.61371 * 105.47312 * 16 14 4 33 33 H 1.08996 * 113.61782 * 270.88671 * 17 16 14 34 34 H 1.09007 * 113.68700 * 139.99297 * 17 16 14 35 35 H 0.96699 * 114.00685 * 180.02562 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 1.7445 -2.1335 1.1246 6 6 2.7110 -2.7803 0.1663 7 1 3.4032 -2.1710 -0.3959 8 6 2.7117 -4.1498 0.0072 9 7 1.8684 -4.8917 0.6915 10 14 3.9093 -4.9516 -1.1812 11 1 3.7088 -6.4229 -1.1688 12 1 3.6699 -4.4314 -2.5514 13 1 5.3008 -4.6376 -0.7687 14 6 1.4414 -0.1087 2.4173 15 1 0.3596 0.0106 2.3571 16 6 2.1758 1.1514 2.9050 17 6 1.9838 0.6147 4.3333 18 6 1.9153 -0.7899 3.7119 19 1 2.8866 -1.2757 3.6194 20 8 0.9282 -1.6325 4.3099 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1225 1.4451 0.1274 26 1 1.7844 1.9182 -0.9469 27 1 1.5764 1.9918 0.8194 28 1 0.7246 -2.2909 0.7736 29 1 1.8611 -2.5775 2.1133 30 1 1.8691 -5.8553 0.5799 31 1 3.2189 1.1973 2.5923 32 1 1.6331 2.0762 2.7095 33 1 1.0504 0.9330 4.7976 34 1 2.8500 0.7651 4.9778 35 1 1.2202 -2.0636 5.1247 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704022459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:19 Heat of formation + Delta-G solvation = -50.724238 kcal Electronic energy + Delta-G solvation = -15269.534873 eV Core-core repulsion = 12881.303717 eV Total energy + Delta-G solvation = -2388.231156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84421 -37.81464 -35.53258 -34.78216 -32.19292 -28.60716 -28.10005 -25.62310 -25.30177 -23.87507 -21.11132 -19.96249 -18.53406 -18.31532 -17.01211 -16.49241 -16.29583 -15.36081 -15.08372 -14.65384 -14.43073 -14.08781 -13.90037 -13.21954 -13.17233 -12.84052 -12.80846 -12.54624 -12.43768 -12.30937 -12.11867 -11.99018 -11.64527 -11.44059 -11.18261 -10.94715 -10.65313 -10.56371 -8.91951 -8.15835 -6.26366 1.39112 1.42625 1.50473 2.40811 3.12356 3.22663 3.58912 3.72645 3.86354 4.00150 4.07139 4.22932 4.32948 4.55607 4.60192 4.75547 4.82661 4.89795 4.94907 5.00014 5.05742 5.07193 5.27959 5.30176 5.32111 5.49417 5.51737 5.57268 5.72832 6.14701 6.47635 6.75053 6.90295 6.94492 7.42412 8.93917 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.010500 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.246899 B = 2666.084667 C = 3176.134428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.130 4.130 4 N -0.523 5.523 5 C 0.209 3.791 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.284 1.284 12 H -0.269 1.269 13 H -0.267 1.267 14 C 0.048 3.952 15 H 0.054 0.946 16 C -0.107 4.107 17 C -0.149 4.149 18 C 0.075 3.925 19 H 0.067 0.933 20 O -0.582 6.582 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.068 0.932 28 H -0.043 1.043 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 12.493 4.313 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 C -0.188 4.188 4 N -0.247 5.247 5 C 0.082 3.918 6 C -0.558 4.558 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.209 1.209 12 H -0.194 1.194 13 H -0.192 1.192 14 C -0.060 4.060 15 H 0.072 0.928 16 C -0.145 4.145 17 C -0.187 4.187 18 C 0.016 3.984 19 H 0.085 0.915 20 O -0.389 6.389 21 H 0.079 0.921 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.087 0.913 28 H -0.026 1.026 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.784 12.577 3.848 13.175 hybrid contribution -0.325 -1.538 -0.163 1.581 sum 0.459 11.038 3.685 11.646 Atomic orbital electron populations 1.22346 0.98215 1.00271 1.02445 1.21644 0.92417 0.96139 0.93268 1.21853 1.01401 0.93209 1.02288 1.62627 1.56962 1.03721 1.01344 1.19339 0.92643 0.84046 0.95726 1.21481 1.18835 0.91938 1.23590 0.92285 1.25911 0.97802 0.97986 0.98084 1.70119 1.38617 1.05635 1.43187 0.85482 0.79273 0.76932 0.79189 1.20918 1.19386 1.19200 1.23527 0.96905 0.96423 0.89187 0.92794 1.22799 1.01364 0.95710 0.94641 1.23419 1.03349 0.94761 0.97195 1.23568 0.91131 0.89725 0.93953 0.91465 1.86512 1.42244 1.65538 1.44651 0.92052 0.90611 0.95820 0.92524 0.92375 0.91353 0.91344 1.02571 0.97172 0.92915 0.89150 0.89115 0.88916 0.89139 0.76326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 8.56 71.98 0.62 -5.74 16 2 C 0.07 2.87 2.84 44.91 0.13 3.00 16 3 C -0.13 -3.73 8.33 71.98 0.60 -3.13 16 4 N -0.52 -23.04 4.38 -847.36 -3.71 -26.75 16 5 C 0.21 11.64 4.55 85.56 0.39 12.03 16 6 C -0.52 -30.61 8.61 25.60 0.22 -30.39 16 7 H 0.06 3.40 7.63 -2.91 -0.02 3.38 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.93 -58.45 13.29 21.45 0.28 -58.16 16 10 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.05 1.79 2.49 45.44 0.11 1.91 16 15 H 0.05 2.13 5.88 -2.39 -0.01 2.12 16 16 C -0.11 -2.90 5.76 31.12 0.18 -2.72 16 17 C -0.15 -3.77 7.91 31.11 0.25 -3.53 16 18 C 0.08 2.67 3.51 31.11 0.11 2.78 16 19 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 20 O -0.58 -21.76 13.42 -148.98 -2.00 -23.76 16 21 H 0.06 2.06 6.12 -2.39 -0.01 2.05 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.02 1.01 6.44 -2.39 -0.02 1.00 16 24 H 0.06 2.50 7.29 -2.39 -0.02 2.49 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.07 1.72 5.59 -2.39 -0.01 1.71 16 28 H -0.04 -2.67 6.16 -2.39 -0.01 -2.69 16 29 H 0.01 0.62 6.35 -2.38 -0.02 0.60 16 30 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.09 2.01 7.10 -2.39 -0.02 1.99 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.39 10.64 9.12 -74.06 -0.68 9.97 16 Total: -1.00 -69.71 272.82 0.06 -69.66 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.40 Total: 16.71 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.06 Total: -25.34 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -3.43 Total: -84.92 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -2.00 Total: -23.76 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.71 0.06 -69.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704022459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds