Wall clock time and date at job start Mon Mar 30 2020 20:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.54887 * 2 1 4 4 C 1.52996 * 117.49691 * 214.29075 * 2 1 3 5 5 C 1.53001 * 60.00150 * 252.51471 * 4 2 1 6 6 C 1.52994 * 117.51640 * 252.52301 * 5 4 2 7 7 N 1.46895 * 117.50002 * 107.49146 * 5 4 2 8 8 C 1.46893 * 111.00168 * 111.37671 * 7 5 4 9 9 C 1.52999 * 109.47520 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.47135 * 65.00085 * 9 8 7 11 11 C 1.42902 * 113.99925 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46974 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99842 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00069 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99806 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46845 * 90.00621 * 16 14 12 18 18 H 1.48503 * 109.47399 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47295 * 330.00717 * 16 14 12 20 20 H 1.09000 * 109.47072 * 274.32981 * 1 2 3 21 21 H 1.09004 * 109.46697 * 34.33139 * 1 2 3 22 22 H 1.08996 * 109.47330 * 154.32648 * 1 2 3 23 23 H 1.09004 * 117.49573 * 145.02450 * 4 2 1 24 24 H 1.09000 * 117.50309 * 0.02562 * 4 2 1 25 25 H 1.09005 * 109.47220 * 248.71383 * 6 5 4 26 26 H 1.09004 * 109.47727 * 8.71459 * 6 5 4 27 27 H 1.09008 * 109.47361 * 128.71449 * 6 5 4 28 28 H 1.00897 * 111.00108 * 235.33740 * 7 5 4 29 29 H 1.09005 * 109.46894 * 59.99921 * 8 7 5 30 30 H 1.09001 * 109.47623 * 300.00243 * 8 7 5 31 31 H 1.09001 * 109.46860 * 304.99938 * 9 8 7 32 32 H 1.09005 * 109.47366 * 185.00687 * 9 8 7 33 33 H 1.09008 * 109.47024 * 60.00004 * 11 10 9 34 34 H 1.08991 * 109.47301 * 300.00125 * 11 10 9 35 35 H 0.97000 * 119.99838 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 -0.7646 5 6 2.2364 -1.1208 0.7654 6 6 3.5486 -0.7754 1.4722 7 7 1.3938 -2.1144 1.4440 8 6 2.2150 -3.1202 2.1308 9 6 1.3043 -4.1358 2.8236 10 8 0.5637 -4.8605 1.8395 11 6 -0.3230 -5.8399 2.3841 12 6 -1.0487 -6.5389 1.2635 13 1 -0.8521 -6.2631 0.2380 14 6 -1.9628 -7.5313 1.5475 15 7 -2.2018 -7.8675 2.7963 16 14 -2.8618 -8.3982 0.1584 17 1 -2.0803 -9.5853 -0.2721 18 1 -4.2014 -8.8321 0.6303 19 1 -3.0185 -7.4666 -0.9874 20 1 -0.3633 0.0776 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3634 -0.9262 -0.4452 23 1 3.1716 -0.8756 -1.2679 24 1 1.6112 -1.8587 -1.2680 25 1 3.9372 -1.6632 1.9712 26 1 4.2746 -0.4236 0.7391 27 1 3.3691 0.0068 2.2099 28 1 0.7553 -1.6692 2.0860 29 1 2.8442 -2.6298 2.8736 30 1 2.8442 -3.6336 1.4037 31 1 0.6141 -3.6127 3.4855 32 1 1.9106 -4.8297 3.4060 33 1 -1.0470 -5.3518 3.0367 34 1 0.2491 -6.5691 2.9576 35 1 -1.7347 -7.4175 3.5176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704269997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:37 Heat of formation + Delta-G solvation = -57.265134 kcal Electronic energy + Delta-G solvation = -14242.047700 eV Core-core repulsion = 11853.532910 eV Total energy + Delta-G solvation = -2388.514790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95071 -38.65627 -35.56359 -34.64125 -30.78909 -29.60243 -28.06678 -27.88830 -24.73723 -23.27367 -21.77937 -20.21754 -19.19767 -17.69711 -16.91610 -16.45719 -16.21910 -15.67706 -15.52293 -15.01355 -14.52851 -14.11675 -14.00396 -13.82666 -13.31223 -13.17455 -12.95123 -12.81476 -12.68171 -12.51025 -12.22570 -11.93543 -11.84923 -11.03363 -10.87418 -10.83405 -10.49890 -10.32770 -9.24931 -8.84442 -6.54702 1.51537 1.61502 1.81947 2.48985 2.77835 3.00322 3.02681 3.09579 3.77132 3.93957 4.05048 4.16631 4.21929 4.40559 4.46073 4.47745 4.50590 4.62371 4.78862 4.83619 4.86255 4.92259 4.95621 5.00827 5.04349 5.20496 5.22035 5.50508 5.68422 5.91920 6.16305 6.33297 6.42944 6.71231 7.26088 8.56763 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038074 B = 0.005981 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.240284 B = 4680.141037 C = 5103.379181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.133 4.133 3 H 0.125 0.875 4 C -0.169 4.169 5 C 0.024 3.976 6 C -0.140 4.140 7 N -0.661 5.661 8 C 0.078 3.922 9 C 0.051 3.949 10 O -0.391 6.391 11 C 0.195 3.805 12 C -0.622 4.622 13 H 0.049 0.951 14 C -0.028 4.028 15 N -0.928 5.928 16 Si 1.130 2.870 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.272 1.272 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.109 0.891 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.341 0.659 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.050 0.950 33 H -0.020 1.020 34 H -0.019 1.019 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 15.888 -2.824 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 H 0.142 0.858 4 C -0.206 4.206 5 C -0.068 4.068 6 C -0.198 4.198 7 N -0.292 5.292 8 C -0.051 4.051 9 C -0.026 4.026 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.660 4.660 13 H 0.068 0.932 14 C -0.226 4.226 15 N -0.565 5.565 16 Si 0.949 3.051 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.197 1.197 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.058 0.942 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.069 0.931 33 H -0.002 1.002 34 H -0.001 1.001 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.706 14.369 -3.881 17.243 hybrid contribution 1.372 1.401 1.746 2.626 sum 10.078 15.770 -2.135 18.837 Atomic orbital electron populations 1.21221 0.93021 1.01526 1.01703 1.22616 0.95440 0.94143 1.02965 0.85752 1.23326 1.02606 1.01021 0.93695 1.21761 0.95357 0.96255 0.93396 1.21814 0.94890 1.02033 1.01081 1.60108 1.19053 1.14734 1.35347 1.21933 0.94121 0.91729 0.97334 1.22697 0.94319 0.94054 0.91514 1.87950 1.57165 1.52321 1.33597 1.19944 0.87474 0.86075 0.94519 1.22279 1.26635 1.22841 0.94207 0.93213 1.27613 0.96152 0.95753 1.03058 1.70899 1.42885 1.42945 0.99746 0.82794 0.75596 0.75517 0.71186 1.19152 1.19823 1.19711 0.92533 0.90936 0.94232 0.87325 0.90845 0.91641 0.90581 0.91241 0.83949 0.90543 0.91402 0.94096 0.93136 1.00235 1.00134 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.49 71.98 0.68 -1.99 16 2 C -0.13 -2.79 6.13 -10.79 -0.07 -2.86 16 3 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.17 -4.07 9.75 30.59 0.30 -3.77 16 5 C 0.02 0.57 2.77 3.53 0.01 0.58 16 6 C -0.14 -2.51 9.48 71.98 0.68 -1.83 16 7 N -0.66 -19.91 6.12 -470.20 -2.88 -22.79 16 8 C 0.08 2.32 5.08 86.30 0.44 2.76 16 9 C 0.05 1.94 6.22 71.98 0.45 2.39 16 10 O -0.39 -20.14 10.27 -148.98 -1.53 -21.67 16 11 C 0.20 11.33 5.00 71.23 0.36 11.68 16 12 C -0.62 -38.93 9.43 25.60 0.24 -38.69 16 13 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 14 C -0.03 -1.71 5.46 84.65 0.46 -1.25 16 15 N -0.93 -58.53 13.65 21.45 0.29 -58.24 16 16 Si 1.13 51.87 29.90 68.60 2.05 53.92 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 21 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.04 1.12 7.90 -2.39 -0.02 1.10 16 23 H 0.11 2.12 8.05 -2.39 -0.02 2.10 16 24 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 25 H 0.06 1.21 5.61 -2.38 -0.01 1.20 16 26 H 0.08 1.16 7.90 -2.39 -0.02 1.14 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.34 9.80 8.38 -89.70 -0.75 9.04 16 29 H 0.08 1.76 6.35 -2.38 -0.02 1.74 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H -0.02 -1.18 8.01 -2.38 -0.02 -1.20 16 34 H -0.02 -1.12 8.01 -2.39 -0.02 -1.13 16 35 H 0.26 16.24 7.22 -92.71 -0.67 15.57 16 Total: -1.00 -70.80 290.16 1.89 -68.91 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.40 Total: 12.83 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 3.55 Total: -32.97 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.58 Total: -81.03 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.53 Total: -21.67 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -70.80 1.89 -68.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704269997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.646 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds