Wall clock time and date at job start Mon Mar 30 2020 20:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.46972 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00535 * 2 1 3 5 5 H 1.07990 * 119.99855 * 240.00215 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31515 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 C 1.52997 * 109.47232 * 120.00420 * 2 1 3 13 13 C 1.52996 * 109.46975 * 299.99763 * 12 2 1 14 14 C 1.53000 * 109.47328 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 N 1.46902 * 109.47094 * 59.99827 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00449 * 15 14 13 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 15 14 19 19 H 1.09002 * 109.47153 * 299.99588 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99760 * 1 2 3 21 21 H 1.09001 * 109.47289 * 179.97438 * 1 2 3 22 22 H 0.96698 * 113.99791 * 179.97438 * 3 2 1 23 23 H 0.97003 * 119.99476 * 179.97438 * 7 6 4 24 24 H 1.08992 * 109.47280 * 60.00298 * 12 2 1 25 25 H 1.09004 * 109.47368 * 60.00217 * 13 12 2 26 26 H 1.09001 * 109.47372 * 300.00372 * 13 12 2 27 27 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 29 29 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 30 30 H 1.00903 * 110.99827 * 179.97438 * 16 15 14 31 31 H 1.00897 * 111.00619 * 303.95638 * 16 15 14 32 32 H 1.09001 * 109.47002 * 299.99574 * 17 15 14 33 33 H 1.09000 * 109.47050 * 179.97438 * 17 15 14 34 34 H 1.09002 * 109.47045 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47375 * 59.99966 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1614 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2492 13 6 1.5300 -0.0001 2.4984 14 6 2.0406 -0.7210 3.7476 15 6 3.5705 -0.7205 3.7473 16 7 4.0597 0.6647 3.7470 17 6 4.0806 -1.4416 2.4980 18 6 3.5700 -0.7207 1.2488 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 2.9703 1.4237 0.0004 23 1 0.7093 1.1619 -3.4844 24 1 1.6768 -1.7489 1.2491 25 1 0.4400 -0.0001 2.4985 26 1 1.8933 1.0276 2.4984 27 1 1.6769 -0.2075 4.6377 28 1 1.6776 -1.7489 3.7478 29 1 3.9344 -1.2344 4.6370 30 1 5.0684 0.6920 3.7472 31 1 3.6839 1.1808 2.9657 32 1 3.7176 -2.4695 2.4981 33 1 5.1706 -1.4408 2.4975 34 1 3.9330 -1.2347 0.3588 35 1 3.9329 0.3071 1.2486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885418229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:55 Heat of formation + Delta-G solvation = -93.026383 kcal Electronic energy + Delta-G solvation = -15578.514042 eV Core-core repulsion = 13188.448527 eV Total energy + Delta-G solvation = -2390.065514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54952 -37.63486 -34.24233 -33.52141 -31.70481 -30.91203 -28.53638 -27.28478 -23.86073 -23.20274 -20.94719 -19.73020 -18.80234 -17.33199 -16.73227 -16.62293 -15.82157 -15.39383 -15.07525 -14.54158 -14.10285 -13.88371 -13.57192 -13.24131 -13.06420 -12.92044 -12.69815 -12.53920 -12.50052 -12.14489 -11.94974 -11.83568 -11.46886 -11.16340 -11.15639 -10.57814 -10.33759 -9.84198 -9.46019 -7.98853 -6.24759 1.38523 1.41020 1.49056 2.42027 3.20275 3.77816 3.93808 3.97297 4.08659 4.22497 4.46105 4.49215 4.66541 4.70426 4.73172 4.78068 4.93134 5.05025 5.14702 5.21573 5.26927 5.33774 5.34999 5.45696 5.58137 5.65705 5.68419 5.87331 6.13545 6.32639 6.36461 6.69219 6.83536 7.43579 7.68888 8.98263 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043816 B = 0.009887 C = 0.009076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.888534 B = 2831.414845 C = 3084.463161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.246 3.754 3 O -0.574 6.574 4 C -0.564 4.564 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.889 5.889 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.094 4.094 13 C -0.106 4.106 14 C -0.108 4.108 15 C 0.097 3.903 16 N -0.848 5.848 17 C -0.146 4.146 18 C -0.102 4.102 19 H 0.031 0.969 20 H 0.054 0.946 21 H 0.038 0.962 22 H 0.350 0.650 23 H 0.255 0.745 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.344 0.656 31 H 0.340 0.660 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -3.607 9.780 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.207 3.793 3 O -0.378 6.378 4 C -0.602 4.602 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.526 5.526 8 Si 0.769 3.231 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.193 1.193 12 C -0.113 4.113 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.015 4.015 16 N -0.380 5.380 17 C -0.186 4.186 18 C -0.140 4.140 19 H 0.050 0.950 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.195 0.805 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.266 -3.292 10.368 11.684 hybrid contribution 1.009 -0.788 -2.270 2.606 sum 5.275 -4.081 8.098 10.491 Atomic orbital electron populations 1.21580 0.97333 0.98874 1.00167 1.18737 0.90748 0.79460 0.90368 1.86472 1.24018 1.30136 1.97183 1.21972 1.32730 1.13085 0.92383 0.92981 1.25699 0.94691 0.95127 1.01556 1.70152 1.36220 1.23083 1.23154 0.85826 0.78924 0.78401 0.79961 1.20505 1.21331 1.19327 1.21594 0.95730 0.98526 0.95419 1.21468 0.99552 0.99389 0.93913 1.21555 0.95037 1.00496 0.97452 1.21376 0.94783 0.88918 0.96422 1.59051 1.13920 1.13141 1.51843 1.22321 1.00412 1.00143 0.95690 1.21389 0.95121 0.99975 0.97490 0.95021 0.92704 0.94340 0.80522 0.93533 0.93341 0.93369 0.92366 0.91410 0.91581 0.89393 0.84335 0.84486 0.91921 0.91344 0.93321 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.27 71.98 0.60 -5.43 16 2 C 0.25 11.75 0.42 -11.54 0.00 11.75 16 3 O -0.57 -28.41 11.66 -148.98 -1.74 -30.14 16 4 C -0.56 -29.71 7.48 25.60 0.19 -29.52 16 5 H 0.05 2.71 6.71 -2.92 -0.02 2.69 16 6 C 0.03 1.70 5.24 84.65 0.44 2.15 16 7 N -0.89 -51.32 10.87 21.45 0.23 -51.09 16 8 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 C -0.09 -3.60 1.57 -10.80 -0.02 -3.62 16 13 C -0.11 -3.58 4.44 30.59 0.14 -3.44 16 14 C -0.11 -2.92 5.64 30.59 0.17 -2.75 16 15 C 0.10 2.37 3.69 44.92 0.17 2.53 16 16 N -0.85 -20.72 9.12 -168.67 -1.54 -22.25 16 17 C -0.15 -3.85 5.61 30.60 0.17 -3.68 16 18 C -0.10 -3.44 4.38 30.59 0.13 -3.30 16 19 H 0.03 1.42 6.43 -2.39 -0.02 1.40 16 20 H 0.05 3.06 6.07 -2.38 -0.01 3.04 16 21 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.35 15.64 7.32 -74.06 -0.54 15.10 16 23 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.72 6.43 -2.39 -0.02 1.70 16 26 H 0.06 2.07 6.11 -2.39 -0.01 2.05 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.34 7.07 9.04 -89.69 -0.81 6.26 16 31 H 0.34 9.32 5.44 -89.70 -0.49 8.83 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 35 H 0.05 1.80 5.40 -2.39 -0.01 1.78 16 Total: -1.00 -59.04 260.12 0.24 -58.80 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.73 Total: 34.88 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 1.99 Total: -35.31 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.30 Total: -73.34 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.74 Total: -30.14 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -59.04 0.24 -58.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885418229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.227 kcal (2) G-P(sol) polarization free energy of solvation -59.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds