Wall clock time and date at job start Mon Mar 30 2020 20:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47286 * 2 1 4 4 C 1.50706 * 109.47175 * 119.99848 * 2 1 3 5 5 H 1.07999 * 119.99865 * 119.99808 * 4 2 1 6 6 C 1.37875 * 119.99903 * 299.99834 * 4 2 1 7 7 N 1.31512 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47141 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46612 * 120.00395 * 8 6 4 11 11 H 1.48495 * 109.46932 * 239.99983 * 8 6 4 12 12 N 1.46901 * 109.47263 * 239.99793 * 2 1 3 13 13 C 1.48565 * 111.00041 * 308.84716 * 12 2 1 14 14 C 1.54373 * 104.59542 * 159.03753 * 13 12 2 15 15 C 1.54262 * 105.06102 * 336.15132 * 14 13 12 16 16 H 1.09003 * 110.32595 * 118.99651 * 15 14 13 17 17 C 1.53004 * 110.32328 * 241.10015 * 15 14 13 18 18 C 1.48561 * 111.00155 * 64.26557 * 12 2 1 19 19 H 1.09002 * 110.41075 * 319.74679 * 18 12 2 20 20 C 1.53001 * 110.40743 * 82.18249 * 18 12 2 21 21 O 1.42900 * 109.47131 * 293.54797 * 20 18 12 22 22 H 1.09004 * 109.47296 * 67.85977 * 1 2 3 23 23 H 1.09003 * 109.47418 * 307.86186 * 1 2 3 24 24 H 1.09001 * 109.47018 * 187.86044 * 1 2 3 25 25 H 0.96997 * 119.99843 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.41106 * 277.81925 * 13 12 2 27 27 H 1.08998 * 110.40585 * 40.14470 * 13 12 2 28 28 H 1.09006 * 110.32531 * 95.04233 * 14 13 12 29 29 H 1.08995 * 110.33095 * 217.25535 * 14 13 12 30 30 H 1.08996 * 109.46726 * 58.54819 * 17 15 14 31 31 H 1.09005 * 109.47113 * 178.54779 * 17 15 14 32 32 H 1.08997 * 109.47111 * 298.54493 * 17 15 14 33 33 H 1.08998 * 109.47323 * 53.54505 * 20 18 12 34 34 H 1.09000 * 109.47218 * 173.54773 * 20 18 12 35 35 H 0.96707 * 114.00248 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1465 -0.1872 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0196 -0.6925 -1.1994 13 6 1.3769 -2.0240 -1.3451 14 6 1.5460 -2.3762 -2.8386 15 6 1.7121 -1.0197 -3.5541 16 1 2.6804 -0.9705 -4.0523 17 6 0.5836 -0.8108 -4.5659 18 6 1.6294 0.0380 -2.4327 19 1 0.6118 0.4185 -2.3432 20 6 2.6064 1.1832 -2.7062 21 8 2.4864 2.1677 -1.6774 22 1 -0.3634 0.3873 -0.9519 23 1 -0.3634 0.6307 0.8113 24 1 -0.3633 -1.0180 0.1405 25 1 0.7081 1.1609 3.4843 26 1 1.8828 -2.7607 -0.7212 27 1 0.3203 -1.9667 -1.0835 28 1 2.4335 -2.9922 -2.9842 29 1 0.6606 -2.8932 -3.2084 30 1 -0.3769 -0.8506 -4.0522 31 1 0.6999 0.1617 -5.0443 32 1 0.6240 -1.5948 -5.3221 33 1 3.6252 0.7959 -2.7212 34 1 2.3754 1.6355 -3.6706 35 1 3.0777 2.9251 -1.7867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227008062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:36 Heat of formation + Delta-G solvation = -47.252255 kcal Electronic energy + Delta-G solvation = -15410.467880 eV Core-core repulsion = 13022.387281 eV Total energy + Delta-G solvation = -2388.080599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.99458 -35.76157 -34.19009 -31.78485 -29.72628 -28.61349 -25.79030 -25.06587 -23.23418 -21.60385 -19.56401 -18.65695 -16.61681 -15.82002 -15.44930 -15.01745 -14.43192 -13.97269 -13.08757 -13.03192 -12.71777 -12.58667 -12.29525 -11.92725 -11.44960 -11.25965 -10.87043 -10.75330 -10.46714 -10.45438 -10.29239 -10.24710 -9.94204 -9.75088 -9.57895 -9.42162 -8.59225 -8.20524 -7.12418 -5.86657 -3.88511 3.36875 3.44206 3.49274 4.51752 4.68479 4.95816 5.11601 5.36592 5.45682 5.50202 5.74668 5.77108 5.80920 5.88878 5.94097 6.05951 6.13028 6.29385 6.40755 6.44427 6.69175 6.74066 6.77726 6.95970 7.02771 7.33718 7.56828 7.83785 7.98897 8.18852 8.42196 8.53636 8.74269 9.18540 9.74755 11.20978 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037914 B = 0.009979 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.331241 B = 2805.320095 C = 3143.464725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.195 3.805 3 H 0.070 0.930 4 C -0.494 4.494 5 H 0.058 0.942 6 C 0.056 3.944 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.287 1.287 12 N -0.494 5.494 13 C 0.035 3.965 14 C -0.121 4.121 15 C -0.091 4.091 16 H 0.072 0.928 17 C -0.142 4.142 18 C 0.056 3.944 19 H 0.058 0.942 20 C 0.096 3.904 21 O -0.553 6.553 22 H 0.007 0.993 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.257 0.743 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -1.465 -11.871 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.089 3.911 3 H 0.087 0.913 4 C -0.533 4.533 5 H 0.076 0.924 6 C -0.144 4.144 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.218 5.218 13 C -0.093 4.093 14 C -0.159 4.159 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.200 4.200 18 C -0.053 4.053 19 H 0.076 0.924 20 C 0.017 3.983 21 O -0.356 6.356 22 H 0.026 0.974 23 H 0.100 0.900 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.915 -1.815 -11.428 11.607 hybrid contribution -0.230 0.026 0.660 0.699 sum 0.685 -1.789 -10.768 10.937 Atomic orbital electron populations 1.22366 1.01382 0.99865 0.98858 1.19593 0.89429 0.96351 0.85760 0.91263 1.21162 1.30154 1.12057 0.89931 0.92397 1.24914 0.95485 0.95197 0.98808 1.69940 1.37380 1.23143 1.22876 0.86533 0.78453 0.79669 0.83270 1.19893 1.21190 1.21342 1.65676 1.53107 1.01294 1.01701 1.22976 0.98551 0.93954 0.93809 1.22418 1.00821 0.96132 0.96548 1.21805 0.98664 0.95276 0.95222 0.90986 1.21867 0.98576 1.00975 0.98532 1.22702 0.97528 0.92912 0.92186 0.92430 1.22078 0.98690 0.88840 0.88672 1.86747 1.65266 1.33864 1.49749 0.97379 0.90033 0.95234 0.93349 0.90922 0.93540 0.91904 0.92262 0.92711 0.92986 0.92886 0.93596 0.94988 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 7.92 37.15 0.29 -3.96 16 2 C 0.20 5.16 2.26 -68.86 -0.16 5.01 16 3 H 0.07 2.03 5.79 -51.93 -0.30 1.73 16 4 C -0.49 -14.19 8.23 -34.44 -0.28 -14.47 16 5 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -26.54 11.41 55.43 0.63 -25.91 16 8 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 N -0.49 -11.12 5.04 -215.62 -1.09 -12.21 16 13 C 0.04 0.72 5.71 -2.18 -0.01 0.70 16 14 C -0.12 -1.92 6.65 -25.35 -0.17 -2.08 16 15 C -0.09 -1.38 3.20 -89.24 -0.29 -1.66 16 16 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 17 C -0.14 -1.80 8.91 37.16 0.33 -1.47 16 18 C 0.06 1.06 2.09 -66.07 -0.14 0.92 16 19 H 0.06 1.19 5.50 -51.93 -0.29 0.90 16 20 C 0.10 1.63 6.61 37.16 0.25 1.88 16 21 O -0.55 -10.56 11.29 -35.23 -0.40 -10.96 16 22 H 0.01 0.18 5.94 -51.93 -0.31 -0.13 16 23 H 0.08 2.30 6.32 -51.93 -0.33 1.97 16 24 H 0.03 0.74 6.38 -51.93 -0.33 0.40 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.07 1.53 7.88 -51.93 -0.41 1.12 16 27 H 0.05 0.99 5.45 -51.93 -0.28 0.70 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 30 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.36 4.99 9.12 45.56 0.42 5.41 16 LS Contribution 268.11 15.07 4.04 4.04 Total: -1.00 -31.47 268.11 -6.81 -38.27 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.71 Total: 3.25 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.27 Total: -13.62 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.45 Total: -38.11 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.40 Total: -10.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.47 -6.81 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227008062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.980 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds