Wall clock time and date at job start Mon Mar 30 2020 20:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47286 * 2 1 4 4 C 1.50706 * 109.47175 * 119.99848 * 2 1 3 5 5 H 1.07999 * 119.99865 * 119.99808 * 4 2 1 6 6 C 1.37875 * 119.99903 * 299.99834 * 4 2 1 7 7 N 1.31512 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47141 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46612 * 120.00395 * 8 6 4 11 11 H 1.48495 * 109.46932 * 239.99983 * 8 6 4 12 12 N 1.46901 * 109.47263 * 239.99793 * 2 1 3 13 13 C 1.48565 * 111.00041 * 308.84716 * 12 2 1 14 14 C 1.54373 * 104.59542 * 159.03753 * 13 12 2 15 15 C 1.54262 * 105.06102 * 336.15132 * 14 13 12 16 16 H 1.09003 * 110.32595 * 118.99651 * 15 14 13 17 17 C 1.53004 * 110.32328 * 241.10015 * 15 14 13 18 18 C 1.48561 * 111.00155 * 64.26557 * 12 2 1 19 19 H 1.09002 * 110.41075 * 319.74679 * 18 12 2 20 20 C 1.53001 * 110.40743 * 82.18249 * 18 12 2 21 21 O 1.42900 * 109.47131 * 293.54797 * 20 18 12 22 22 H 1.09004 * 109.47296 * 67.85977 * 1 2 3 23 23 H 1.09003 * 109.47418 * 307.86186 * 1 2 3 24 24 H 1.09001 * 109.47018 * 187.86044 * 1 2 3 25 25 H 0.96997 * 119.99843 * 179.97438 * 7 6 4 26 26 H 1.08994 * 110.41106 * 277.81925 * 13 12 2 27 27 H 1.08998 * 110.40585 * 40.14470 * 13 12 2 28 28 H 1.09006 * 110.32531 * 95.04233 * 14 13 12 29 29 H 1.08995 * 110.33095 * 217.25535 * 14 13 12 30 30 H 1.08996 * 109.46726 * 58.54819 * 17 15 14 31 31 H 1.09005 * 109.47113 * 178.54779 * 17 15 14 32 32 H 1.08997 * 109.47111 * 298.54493 * 17 15 14 33 33 H 1.08998 * 109.47323 * 53.54505 * 20 18 12 34 34 H 1.09000 * 109.47218 * 173.54773 * 20 18 12 35 35 H 0.96707 * 114.00248 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2869 3.6039 10 1 3.1465 -0.1872 4.8165 11 1 1.1660 -1.5865 4.8161 12 7 2.0196 -0.6925 -1.1994 13 6 1.3769 -2.0240 -1.3451 14 6 1.5460 -2.3762 -2.8386 15 6 1.7121 -1.0197 -3.5541 16 1 2.6804 -0.9705 -4.0523 17 6 0.5836 -0.8108 -4.5659 18 6 1.6294 0.0380 -2.4327 19 1 0.6118 0.4185 -2.3432 20 6 2.6064 1.1832 -2.7062 21 8 2.4864 2.1677 -1.6774 22 1 -0.3634 0.3873 -0.9519 23 1 -0.3634 0.6307 0.8113 24 1 -0.3633 -1.0180 0.1405 25 1 0.7081 1.1609 3.4843 26 1 1.8828 -2.7607 -0.7212 27 1 0.3203 -1.9667 -1.0835 28 1 2.4335 -2.9922 -2.9842 29 1 0.6606 -2.8932 -3.2084 30 1 -0.3769 -0.8506 -4.0522 31 1 0.6999 0.1617 -5.0443 32 1 0.6240 -1.5948 -5.3221 33 1 3.6252 0.7959 -2.7212 34 1 2.3754 1.6355 -3.6706 35 1 3.0777 2.9251 -1.7867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227008062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:35 Heat of formation + Delta-G solvation = -71.171415 kcal Electronic energy + Delta-G solvation = -15411.505092 eV Core-core repulsion = 13022.387281 eV Total energy + Delta-G solvation = -2389.117812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53066 -37.20374 -36.00466 -33.67741 -31.18673 -30.28306 -27.43635 -27.13168 -24.57847 -23.35231 -20.96937 -20.40811 -18.05688 -17.92606 -17.11248 -16.61329 -16.01686 -15.68958 -14.80141 -14.44699 -14.28808 -14.01084 -13.77837 -13.40272 -13.33972 -12.88758 -12.81609 -12.34928 -12.27721 -12.18798 -12.00142 -11.74572 -11.49588 -11.45430 -11.15133 -10.95977 -10.61354 -10.34587 -8.90812 -8.06589 -6.16388 1.39527 1.40453 1.53024 2.44038 3.21511 3.40452 3.49694 3.84753 4.12490 4.17834 4.36628 4.50475 4.58209 4.62420 4.68564 4.78916 4.84212 4.88289 4.97328 5.03915 5.14260 5.17271 5.23474 5.31664 5.35982 5.50704 5.63516 5.80780 5.85000 6.27448 6.54213 6.76033 6.98078 7.09923 7.51660 9.00165 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037914 B = 0.009979 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.331241 B = 2805.320095 C = 3143.464725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 H 0.038 0.962 4 C -0.512 4.512 5 H 0.048 0.952 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.508 5.508 13 C 0.031 3.969 14 C -0.112 4.112 15 C -0.083 4.083 16 H 0.090 0.910 17 C -0.137 4.137 18 C 0.049 3.951 19 H 0.036 0.964 20 C 0.094 3.906 21 O -0.587 6.587 22 H 0.022 0.978 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -2.310 -13.462 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.094 3.906 3 H 0.055 0.945 4 C -0.551 4.551 5 H 0.066 0.934 6 C -0.191 4.191 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.232 5.232 13 C -0.097 4.097 14 C -0.149 4.149 15 C -0.102 4.102 16 H 0.109 0.891 17 C -0.194 4.194 18 C -0.060 4.060 19 H 0.054 0.946 20 C 0.016 3.984 21 O -0.395 6.395 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.439 -2.656 -13.042 13.387 hybrid contribution -0.380 0.322 1.124 1.229 sum 1.059 -2.335 -11.918 12.191 Atomic orbital electron populations 1.22145 1.01268 0.98940 0.98413 1.19267 0.89317 0.94845 0.87128 0.94473 1.21426 1.30278 1.11979 0.91418 0.93380 1.25709 0.95630 0.95910 1.01801 1.70074 1.38164 1.24296 1.23601 0.85508 0.78048 0.78613 0.79440 1.19396 1.20607 1.20648 1.65552 1.53422 1.02359 1.01826 1.22998 0.97021 0.92646 0.97084 1.22394 1.02574 0.97032 0.92947 1.21824 1.00805 0.93102 0.94441 0.89136 1.21837 0.96716 1.02685 0.98201 1.22914 0.96805 0.94419 0.91900 0.94589 1.22198 0.98289 0.88221 0.89682 1.86694 1.66351 1.35222 1.51184 0.95906 0.92953 0.95533 0.93233 0.92586 0.95141 0.90472 0.90066 0.93846 0.91782 0.90352 0.93353 0.91298 0.76686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.85 7.92 71.98 0.57 -7.28 16 2 C 0.20 10.97 2.26 44.17 0.10 11.07 16 3 H 0.04 2.27 5.79 -2.39 -0.01 2.25 16 4 C -0.51 -30.09 8.23 25.60 0.21 -29.88 16 5 H 0.05 2.84 7.53 -2.91 -0.02 2.82 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -55.90 11.41 21.45 0.24 -55.66 16 8 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 N -0.51 -22.95 5.04 -836.10 -4.21 -27.16 16 13 C 0.03 1.24 5.71 86.45 0.49 1.73 16 14 C -0.11 -3.24 6.65 31.49 0.21 -3.03 16 15 C -0.08 -2.26 3.20 -9.90 -0.03 -2.29 16 16 H 0.09 2.18 7.86 -2.39 -0.02 2.16 16 17 C -0.14 -2.96 8.91 71.98 0.64 -2.32 16 18 C 0.05 1.78 2.09 45.06 0.09 1.87 16 19 H 0.04 1.48 5.50 -2.39 -0.01 1.46 16 20 C 0.09 3.05 6.61 71.98 0.48 3.52 16 21 O -0.59 -22.42 11.29 -148.98 -1.68 -24.11 16 22 H 0.02 1.09 5.94 -2.38 -0.01 1.07 16 23 H 0.05 3.05 6.32 -2.39 -0.02 3.03 16 24 H 0.03 1.36 6.38 -2.39 -0.02 1.34 16 25 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.06 2.38 7.88 -2.39 -0.02 2.36 16 27 H 0.03 1.31 5.45 -2.39 -0.01 1.29 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.08 2.02 7.71 -2.39 -0.02 2.00 16 30 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.38 10.40 9.12 -74.05 -0.68 9.72 16 Total: -1.00 -68.95 268.11 -0.02 -68.97 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.40 Total: 15.70 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.21 Total: -25.71 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -3.97 Total: -82.82 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.68 Total: -24.11 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -68.95 -0.02 -68.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227008062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.206 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds