Wall clock time and date at job start Mon Mar 30 2020 20:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.50697 * 109.47193 * 239.98954 * 2 1 3 5 5 H 1.08001 * 120.00437 * 239.99746 * 4 2 1 6 6 C 1.37880 * 119.99628 * 60.00261 * 4 2 1 7 7 N 1.31516 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99933 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46555 * 60.00232 * 8 6 4 10 10 H 1.48500 * 109.47063 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47249 * 300.00323 * 8 6 4 12 12 N 1.46907 * 109.46692 * 119.99577 * 2 1 3 13 13 C 1.48539 * 111.00032 * 298.30992 * 12 2 1 14 14 C 1.54930 * 103.22653 * 200.28398 * 13 12 2 15 15 C 1.54600 * 102.92510 * 37.41537 * 14 13 12 16 16 H 1.08998 * 110.39259 * 97.00152 * 15 14 13 17 17 C 1.52997 * 110.30810 * 219.12574 * 15 14 13 18 18 C 1.52994 * 109.47421 * 290.71416 * 17 15 14 19 19 O 1.42896 * 109.47230 * 180.02562 * 18 17 15 20 20 C 1.47902 * 110.99757 * 180.91939 * 12 2 1 21 21 H 1.09000 * 109.47021 * 294.45081 * 1 2 3 22 22 H 1.09000 * 109.46985 * 54.45268 * 1 2 3 23 23 H 1.09004 * 109.46806 * 174.45337 * 1 2 3 24 24 H 0.96995 * 119.99714 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.66244 * 318.72093 * 13 12 2 26 26 H 1.08998 * 110.66149 * 81.67795 * 13 12 2 27 27 H 1.08997 * 110.72417 * 279.05220 * 14 13 12 28 28 H 1.09000 * 110.72174 * 155.77598 * 14 13 12 29 29 H 1.09004 * 109.46959 * 170.71223 * 17 15 14 30 30 H 1.08999 * 109.46965 * 50.71542 * 17 15 14 31 31 H 1.08999 * 109.47153 * 300.00011 * 18 17 15 32 32 H 1.09004 * 109.47212 * 59.99961 * 18 17 15 33 33 H 0.96704 * 113.99926 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.91658 * 26.48523 * 20 12 2 35 35 H 1.08996 * 109.91327 * 265.19607 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3226 -1.1201 -4.0078 9 1 1.8279 -2.5204 -4.0077 10 1 1.8280 -0.4199 -5.2204 11 1 3.8075 -1.1196 -4.0075 12 7 2.0196 -0.6925 1.1996 13 6 1.5770 0.0044 2.4344 14 6 2.5722 -0.5069 3.5061 15 6 3.9046 -0.5945 2.7269 16 1 4.5032 0.3005 2.8963 17 6 4.6847 -1.8416 3.1476 18 6 5.1857 -1.6697 4.5830 19 8 5.9148 -2.8342 4.9757 20 6 3.4980 -0.6930 1.2449 21 1 -0.3633 0.4254 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3633 -1.0229 -0.0993 24 1 0.7090 1.1610 -3.4844 25 1 1.6596 1.0849 2.3169 26 1 0.5552 -0.2765 2.6893 27 1 2.2739 -1.4893 3.8720 28 1 2.6523 0.2041 4.3285 29 1 5.5352 -1.9805 2.4801 30 1 4.0332 -2.7136 3.0921 31 1 5.8372 -0.7977 4.6385 32 1 4.3352 -1.5309 5.2505 33 1 6.2626 -2.7951 5.8772 34 1 3.8867 0.1643 0.6954 35 1 3.8822 -1.6181 0.8152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227567259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:45 Heat of formation + Delta-G solvation = -59.569329 kcal Electronic energy + Delta-G solvation = -14704.230433 eV Core-core repulsion = 12315.615725 eV Total energy + Delta-G solvation = -2388.614708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.68419 -36.85148 -34.26169 -32.18625 -29.86705 -28.38378 -26.50099 -25.00792 -22.29248 -21.59188 -19.61712 -19.35448 -17.30990 -16.12082 -15.58558 -15.10204 -14.79819 -14.21238 -13.71564 -13.14294 -12.99588 -12.40034 -12.18004 -11.77954 -11.55348 -11.23755 -11.11068 -10.85546 -10.66275 -10.53274 -10.32584 -10.26196 -10.04396 -9.95544 -9.87155 -9.71277 -8.85385 -8.40541 -7.21064 -5.98186 -4.02059 3.34689 3.38506 3.42105 4.19657 4.44202 4.95653 5.03786 5.16164 5.21895 5.33426 5.37414 5.53659 5.61093 5.87525 5.91760 5.98149 6.24609 6.28671 6.37403 6.42614 6.56526 6.73478 6.76164 6.87855 7.08336 7.12657 7.52638 7.56361 7.68078 7.87305 8.18525 8.35260 8.60362 9.04374 9.62914 11.09143 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039323 B = 0.007374 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.885961 B = 3796.329285 C = 4355.644492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.204 3.796 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.512 5.512 13 C 0.034 3.966 14 C -0.119 4.119 15 C -0.100 4.100 16 H 0.067 0.933 17 C -0.107 4.107 18 C 0.075 3.925 19 O -0.577 6.577 20 C 0.059 3.941 21 H 0.007 0.993 22 H 0.080 0.920 23 H 0.035 0.965 24 H 0.260 0.740 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.374 0.626 34 H 0.043 0.957 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -1.603 12.602 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.237 5.237 13 C -0.094 4.094 14 C -0.157 4.157 15 C -0.119 4.119 16 H 0.086 0.914 17 C -0.145 4.145 18 C -0.002 4.002 19 O -0.382 6.382 20 C -0.070 4.070 21 H 0.026 0.974 22 H 0.099 0.901 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.220 0.780 34 H 0.061 0.939 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.113 -2.190 11.787 13.033 hybrid contribution 0.708 0.709 -0.348 1.061 sum 5.820 -1.481 11.439 12.920 Atomic orbital electron populations 1.21778 0.97641 1.00353 0.98909 1.19438 0.92506 0.91882 0.86444 0.98378 1.21087 1.30999 1.12243 0.89786 0.92117 1.24935 0.95226 0.95071 0.99004 1.69897 1.37034 1.23046 1.23451 0.86586 0.79073 0.79800 0.82097 1.20208 1.21377 1.20371 1.64869 1.06310 1.50213 1.02311 1.23131 0.98587 0.96179 0.91503 1.22593 0.94890 1.01026 0.97160 1.22037 0.96018 0.96886 0.96945 0.91448 1.21576 1.00110 0.98763 0.94034 1.22287 0.94200 0.86809 0.96914 1.86504 1.74303 1.41840 1.35528 1.22629 0.90354 1.01361 0.92637 0.97399 0.90099 0.94619 0.92993 0.94929 0.91051 0.91132 0.92285 0.91397 0.90774 0.94054 0.93661 0.77952 0.93887 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.90 37.16 0.33 -2.89 16 2 C 0.20 5.28 1.74 -68.86 -0.12 5.16 16 3 H 0.00 -0.04 8.00 -51.93 -0.42 -0.45 16 4 C -0.50 -14.08 8.10 -34.44 -0.28 -14.36 16 5 H 0.06 1.71 7.31 -52.49 -0.38 1.32 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.91 11.38 55.43 0.63 -25.28 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.51 -11.34 5.10 -223.88 -1.14 -12.48 16 13 C 0.03 0.64 5.49 -1.90 -0.01 0.62 16 14 C -0.12 -1.76 5.87 -24.87 -0.15 -1.91 16 15 C -0.10 -1.53 3.00 -89.26 -0.27 -1.80 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.11 -1.51 4.74 -26.74 -0.13 -1.63 16 18 C 0.08 0.87 6.92 37.15 0.26 1.13 16 19 O -0.58 -6.81 13.66 -35.23 -0.48 -7.29 16 20 C 0.06 1.17 5.39 -2.75 -0.01 1.15 16 21 H 0.01 0.16 6.70 -51.93 -0.35 -0.19 16 22 H 0.08 2.19 6.24 -51.93 -0.32 1.87 16 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.62 7.98 -51.93 -0.41 0.20 16 26 H 0.07 1.29 7.53 -51.93 -0.39 0.89 16 27 H 0.07 1.03 7.76 -51.93 -0.40 0.62 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.13 7.99 -51.93 -0.42 0.72 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.48 7.58 -51.93 -0.39 0.08 16 33 H 0.37 2.50 9.12 45.56 0.42 2.91 16 34 H 0.04 0.92 7.71 -51.93 -0.40 0.52 16 35 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -30.43 276.85 -7.42 -37.86 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.11 Total: -0.69 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.47 Total: -12.98 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.51 Total: -37.76 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.48 Total: -7.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.43 -7.42 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227567259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.714 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds