Wall clock time and date at job start Mon Mar 30 2020 20:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.50697 * 109.47193 * 239.98954 * 2 1 3 5 5 H 1.08001 * 120.00437 * 239.99746 * 4 2 1 6 6 C 1.37880 * 119.99628 * 60.00261 * 4 2 1 7 7 N 1.31516 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99933 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46555 * 60.00232 * 8 6 4 10 10 H 1.48500 * 109.47063 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47249 * 300.00323 * 8 6 4 12 12 N 1.46907 * 109.46692 * 119.99577 * 2 1 3 13 13 C 1.48539 * 111.00032 * 298.30992 * 12 2 1 14 14 C 1.54930 * 103.22653 * 200.28398 * 13 12 2 15 15 C 1.54600 * 102.92510 * 37.41537 * 14 13 12 16 16 H 1.08998 * 110.39259 * 97.00152 * 15 14 13 17 17 C 1.52997 * 110.30810 * 219.12574 * 15 14 13 18 18 C 1.52994 * 109.47421 * 290.71416 * 17 15 14 19 19 O 1.42896 * 109.47230 * 180.02562 * 18 17 15 20 20 C 1.47902 * 110.99757 * 180.91939 * 12 2 1 21 21 H 1.09000 * 109.47021 * 294.45081 * 1 2 3 22 22 H 1.09000 * 109.46985 * 54.45268 * 1 2 3 23 23 H 1.09004 * 109.46806 * 174.45337 * 1 2 3 24 24 H 0.96995 * 119.99714 * 180.02562 * 7 6 4 25 25 H 1.09001 * 110.66244 * 318.72093 * 13 12 2 26 26 H 1.08998 * 110.66149 * 81.67795 * 13 12 2 27 27 H 1.08997 * 110.72417 * 279.05220 * 14 13 12 28 28 H 1.09000 * 110.72174 * 155.77598 * 14 13 12 29 29 H 1.09004 * 109.46959 * 170.71223 * 17 15 14 30 30 H 1.08999 * 109.46965 * 50.71542 * 17 15 14 31 31 H 1.08999 * 109.47153 * 300.00011 * 18 17 15 32 32 H 1.09004 * 109.47212 * 59.99961 * 18 17 15 33 33 H 0.96704 * 113.99926 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.91658 * 26.48523 * 20 12 2 35 35 H 1.08996 * 109.91327 * 265.19607 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4826 7 7 0.9436 0.8299 -2.6034 8 14 2.3226 -1.1201 -4.0078 9 1 1.8279 -2.5204 -4.0077 10 1 1.8280 -0.4199 -5.2204 11 1 3.8075 -1.1196 -4.0075 12 7 2.0196 -0.6925 1.1996 13 6 1.5770 0.0044 2.4344 14 6 2.5722 -0.5069 3.5061 15 6 3.9046 -0.5945 2.7269 16 1 4.5032 0.3005 2.8963 17 6 4.6847 -1.8416 3.1476 18 6 5.1857 -1.6697 4.5830 19 8 5.9148 -2.8342 4.9757 20 6 3.4980 -0.6930 1.2449 21 1 -0.3633 0.4254 0.9355 22 1 -0.3633 0.5975 -0.8362 23 1 -0.3633 -1.0229 -0.0993 24 1 0.7090 1.1610 -3.4844 25 1 1.6596 1.0849 2.3169 26 1 0.5552 -0.2765 2.6893 27 1 2.2739 -1.4893 3.8720 28 1 2.6523 0.2041 4.3285 29 1 5.5352 -1.9805 2.4801 30 1 4.0332 -2.7136 3.0921 31 1 5.8372 -0.7977 4.6385 32 1 4.3352 -1.5309 5.2505 33 1 6.2626 -2.7951 5.8772 34 1 3.8867 0.1643 0.6954 35 1 3.8822 -1.6181 0.8152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227567259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:44 Heat of formation + Delta-G solvation = -82.438126 kcal Electronic energy + Delta-G solvation = -14705.222098 eV Core-core repulsion = 12315.615725 eV Total energy + Delta-G solvation = -2389.606373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.16188 -37.85856 -35.99306 -33.94066 -31.47268 -29.98412 -27.96013 -27.07002 -23.40992 -23.30476 -21.21285 -20.88238 -18.32874 -18.11357 -17.16848 -16.46702 -16.20093 -15.87889 -15.00371 -14.80928 -14.44115 -14.01305 -13.75908 -13.46040 -13.04446 -12.87249 -12.75152 -12.58886 -12.36677 -12.26261 -12.02858 -11.70600 -11.59241 -11.43786 -11.41993 -10.93043 -10.78647 -10.55123 -9.01766 -8.13771 -6.25430 1.39848 1.41867 1.49701 2.40631 3.14002 3.31894 3.46506 3.77799 3.86252 4.16503 4.35171 4.39885 4.48377 4.61946 4.65788 4.77266 4.81060 4.88516 4.97144 5.01138 5.05671 5.10603 5.18107 5.22385 5.32594 5.44922 5.46915 5.70710 5.75217 6.21629 6.36159 6.66441 6.88364 6.97238 7.43869 8.92544 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039323 B = 0.007374 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.885961 B = 3796.329285 C = 4355.644492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.209 3.791 3 H -0.037 1.037 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.526 5.526 13 C 0.028 3.972 14 C -0.105 4.105 15 C -0.087 4.087 16 H 0.085 0.915 17 C -0.104 4.104 18 C 0.081 3.919 19 O -0.598 6.598 20 C 0.056 3.944 21 H 0.032 0.968 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.017 0.983 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -2.032 14.183 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H -0.019 1.019 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.250 5.250 13 C -0.100 4.100 14 C -0.142 4.142 15 C -0.107 4.107 16 H 0.103 0.897 17 C -0.142 4.142 18 C 0.003 3.997 19 O -0.407 6.407 20 C -0.072 4.072 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.036 0.964 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.820 -2.625 13.403 14.846 hybrid contribution 0.498 0.845 -0.809 1.271 sum 6.319 -1.780 12.595 14.203 Atomic orbital electron populations 1.21591 0.97177 0.99484 0.99198 1.19226 0.92835 0.90032 0.87789 1.01918 1.21346 1.31240 1.12226 0.91208 0.92993 1.25721 0.95336 0.95760 1.01895 1.70019 1.37728 1.24096 1.24154 0.85591 0.78678 0.78728 0.78518 1.19728 1.20601 1.19785 1.64763 1.07721 1.50193 1.02364 1.23260 1.00041 0.95686 0.91004 1.22568 0.92741 1.02222 0.96712 1.21926 0.96913 0.98414 0.93407 0.89690 1.21478 0.99303 0.97260 0.96154 1.22183 0.95185 0.87262 0.95032 1.86439 1.74528 1.42078 1.37645 1.22629 0.89102 0.99481 0.95985 0.94896 0.92483 0.95313 0.92866 0.95556 0.90530 0.90388 0.88686 0.92346 0.92318 0.92401 0.92034 0.75319 0.96425 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.90 71.98 0.64 -5.28 16 2 C 0.21 11.10 1.74 44.17 0.08 11.18 16 3 H -0.04 -2.16 8.00 -2.39 -0.02 -2.18 16 4 C -0.52 -30.00 8.10 25.60 0.21 -29.79 16 5 H 0.05 3.00 7.31 -2.91 -0.02 2.98 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.29 11.38 21.45 0.24 -54.04 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.53 -23.46 5.10 -862.22 -4.40 -27.86 16 13 C 0.03 1.00 5.49 86.65 0.48 1.47 16 14 C -0.10 -2.79 5.87 31.80 0.19 -2.60 16 15 C -0.09 -2.52 3.00 -9.92 -0.03 -2.55 16 16 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -2.74 4.74 30.59 0.14 -2.59 16 18 C 0.08 1.59 6.92 71.98 0.50 2.09 16 19 O -0.60 -12.41 13.66 -148.98 -2.03 -14.44 16 20 C 0.06 2.27 5.39 86.45 0.47 2.74 16 21 H 0.03 1.45 6.70 -2.39 -0.02 1.43 16 22 H 0.06 3.16 6.24 -2.39 -0.01 3.15 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.03 0.97 7.98 -2.39 -0.02 0.95 16 26 H 0.08 2.63 7.53 -2.39 -0.02 2.61 16 27 H 0.08 2.00 7.76 -2.39 -0.02 1.98 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.06 1.72 7.99 -2.39 -0.02 1.70 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.03 7.58 -2.38 -0.02 1.01 16 33 H 0.40 4.03 9.12 -74.05 -0.68 3.35 16 34 H 0.02 0.78 7.71 -2.39 -0.02 0.76 16 35 H 0.06 2.41 7.47 -2.39 -0.02 2.39 16 Total: -1.00 -66.39 276.85 -0.67 -67.06 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.38 Total: 6.55 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.11 Total: -24.23 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -4.15 Total: -81.90 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -2.03 Total: -14.44 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.39 -0.67 -67.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227567259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.381 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds